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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PGSC0003DMP400024337 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
AP2 |
| Protein Properties |
Length: 308aa MW: 33960.2 Da PI: 5.5747 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400024337 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 37.3 | 6.7e-12 | 72 | 117 | 7 | 55 |
AP2 7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
r++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g
PGSC0003DMP400024337 72 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 117
899*********988532...5************************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009845 | Biological Process | seed germination |
| GO:0040019 | Biological Process | positive regulation of embryonic development |
| GO:0048364 | Biological Process | root development |
| GO:0060772 | Biological Process | leaf phyllotactic patterning |
| GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 308 aa
Download sequence Send
to blast |
MIVALDELNH HCGISVYLGG YDKEEKAARA YDLAALKYWG PTTTTNFPVS NYERELEEMK 60
NMTRQEFVAS LRRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA 120
VTNFDISRYD VKSIASSNLP VGGMSNKSKS SSDESTKNVE NRPNDISSAP NFPSQNPSMV 180
NLGFGLPIKQ DASDFWSSLG YNNDQNKNGS LFQGTTMNAQ GTTFFSNEVN NSNVMFNEQG 240
YYNHDQQQQS GGSSSEISMA LNSNIATTTT TIDSSSFGNW MTPSLHSFQS SANNNLAPFH 300
TPIFGME*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975446 | 1e-164 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
| Publications
? help Back to Top |
- Todd J,Post-Beittenmiller D,Jaworski JG
KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
Plant J., 1999. 17(2): p. 119-30
[PMID:10074711] - Xu X, et al.
Genome sequence and analysis of the tuber crop potato.
Nature, 2011. 475(7355): p. 189-95
[PMID:21743474] - Molitor AM,Bu Z,Yu Y,Shen WH
Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
PLoS Genet., 2014. 10(1): p. e1004091
[PMID:24465219] - Feng J,Chen D,Berr A,Shen WH
ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
Plant Physiol., 2016. 172(3): p. 1746-1759
[PMID:27630184] - Santuari L, et al.
The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
Plant Cell, 2016. 28(12): p. 2937-2951
[PMID:27920338] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
[PMID:29078398]
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