PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400023373

Common Name

LOC102597818

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

ZF-HD

Protein Properties

Length: 347aa MW: 38027.1 Da PI: 7.7244

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400023373	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	110	1.3e-34	57	114	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v Y+eClkNhAaslGghavDGCgEf+ps++++ +++++lkCaACgCHRnFHRre+ee PGSC0003DMP400023373 57 VVIYRECLKNHAASLGGHAVDGCGEFLPSPTANpSDPTSLKCAACGCHRNFHRREPEE 114 589****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	8.4E-29	58	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.084	60	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.3E-31	60	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	9.0E-23	60	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.55E-16	187	260	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-28	188	261	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.7E-25	199	256	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MDLTNNTTIT TTTTTTTTVK TPEAEIETPT QIQKLKPFPF SNGVLKRKSS FHHHPVVVIY 60 RECLKNHAAS LGGHAVDGCG EFLPSPTANP SDPTSLKCAA CGCHRNFHRR EPEEPVVIPP 120 PPIATAVLEY QPHHRHHPPP PLQVPRGDHS SPNSPSPPPI SSAYYPASAP HMLLALSAGF 180 CGEKNQNPTS APLANSNGRK RFRTKFTPDQ KVKMLELAER IGWKMQKRDE DLVSNFCNEI 240 GVEKGVLKVW MHNNKNTFGK KSDQPNSGSG DGDNDNDNDD NHHQNGNTNS VNGFCIVSRN 300 NNTDSEFHQH IQQHQHESNN SDNKKGIIHH LHTSDSVVAT NGSSSS*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MDLTNNTTIT TTTTTTTTVK TPEAEIETPT QIQKLKPFPF SNGVLKRKSS FHHHPVVVIY  60
RECLKNHAAS LGGHAVDGCG EFLPSPTANP SDPTSLKCAA CGCHRNFHRR EPEEPVVIPP  120
PPIATAVLEY QPHHRHHPPP PLQVPRGDHS SPNSPSPPPI SSAYYPASAP HMLLALSAGF  180
CGEKNQNPTS APLANSNGRK RFRTKFTPDQ KVKMLELAER IGWKMQKRDE DLVSNFCNEI  240
GVEKGVLKVW MHNNKNTFGK KSDQPNSGSG DGDNDNDNDD NHHQNGNTNS VNGFCIVSRN  300
NNTDSEFHQH IQQHQHESNN SDNKKGIIHH LHTSDSVVAT NGSSSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-20	200	257	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400023373

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006363398.1	0.0	PREDICTED: zinc-finger homeodomain protein 9-like
Swissprot	Q9LHF0	5e-72	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	M1B0K2	0.0	M1B0K2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400034368	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1088	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	6e-65	homeobox protein 34

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400023373
Entrez Gene	102597818

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]