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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400022973 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 23748.3 Da PI: 9.4076 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.4 | 1.9e-11 | 82 | 126 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +Er+RR++i + f L +l+P + K++Ka+iLe A I++L PGSC0003DMP400022973 82 HLLAERKRRKKISKLFVSLASLIPGL-----NKMDKASILEGAATLIRQL 126 7789*********************8.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-13 | 75 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.342 | 77 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-12 | 81 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-9 | 82 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.84E-9 | 82 | 126 | No hit | No description |
SMART | SM00353 | 3.9E-11 | 83 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MDDLALIFSQ HYNGETSRKQ LHKEEDEKAN SLACIISFNN NFENSLLIPK EEANNTISFS 60 NNNYIIGAKF GERRSGEQAH EHLLAERKRR KKISKLFVSL ASLIPGLNKM DKASILEGAA 120 TLIRQLGERA KQGDHQSTID MMKKSSLLPE VEVKSLEKEL LITILLYKNQ QKGNIDEILS 180 VIQRLHLTIK TTNFMPFGTT SMHITVIAQV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400022973 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233494 | 1e-171 | AC233494.1 Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH126H02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015158516.1 | 1e-152 | PREDICTED: transcription factor bHLH18-like | ||||
TrEMBL | M1AZM0 | 1e-151 | M1AZM0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400033757 | 1e-152 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14501 | 9 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22750.1 | 2e-18 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400022973 |
Publications ? help Back to Top | |||
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