PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400022655

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 357aa MW: 40059.6 Da PI: 5.0755

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400022655	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.4	8.3e-10	71	107	4	39
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLe 39 +k+ rr+++NReAAr+sR+RKka++++Le+ k k L+ PGSC0003DMP400022655 71 DKVRRRLAQNREAARKSRLRKKAYVQQLENsKLKLLQ 107 799**************************82444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.8E-7	67	115	No hit	No description
SMART	SM00338	8.4E-5	68	131	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.967	70	114	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-6	71	107	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.57E-6	72	113	No hit	No description
PROSITE pattern	PS00036	0	75	90	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.4E-30	159	233	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MGICDPIHQI GMWGDFKGSS FPDTLILEVE NCLENEMPIM EKRLENEIEE PSQVTVGTSN 60 RYEPETTKRI DKVRRRLAQN REAARKSRLR KKAYVQQLEN SKLKLLQLEQ ELERNRQQGL 120 CVGDGLDASQ IGCSGTANSG IASFEMEYGH WVEEQDRQTD DLRNALNSQM GEIELRILVE 180 GCLNHYFDLF RLKATAANAD VLYLMSGTWK TSAERFFLWI GGFRPSELLK VLTPHVEPLS 240 DQQIQEVSNL TQSCQQAEDA LSQGMVKLHQ ILAEAVAAGT LGEGIILPQM TATIEKLEAL 300 VRFVNQADHL RQETLLQMSC ILAAHQSAQG LLALGEYFKR LRALSSLWAG RLSEPA*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MGICDPIHQI GMWGDFKGSS FPDTLILEVE NCLENEMPIM EKRLENEIEE PSQVTVGTSN  60
RYEPETTKRI DKVRRRLAQN REAARKSRLR KKAYVQQLEN SKLKLLQLEQ ELERNRQQGL  120
CVGDGLDASQ IGCSGTANSG IASFEMEYGH WVEEQDRQTD DLRNALNSQM GEIELRILVE  180
GCLNHYFDLF RLKATAANAD VLYLMSGTWK TSAERFFLWI GGFRPSELLK VLTPHVEPLS  240
DQQIQEVSNL TQSCQQAEDA LSQGMVKLHQ ILAEAVAAGT LGEGIILPQM TATIEKLEAL  300
VRFVNQADHL RQETLLQMSC ILAAHQSAQG LLALGEYFKR LRALSSLWAG RLSEPA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400022655

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X82544	0.0	X82544.1 S.tuberosum mRNA for leucine zipper transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001305473.1	0.0	TGACG-sequence-specific DNA-binding protein TGA-1A
Swissprot	P14232	0.0	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	M1AYX4	0.0	M1AYX4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400033308	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-137	bZIP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400022655

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]