PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022411
Common NameLOC102602683
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 274aa    MW: 29555.4 Da    PI: 7.3754
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022411genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.85.3e-314107199
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++
  PGSC0003DMP400022411   4 SCNGCRVLRKGCSESCSIRPCLqwiknPDSQSNATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGN 92 
                           6**************************************************************************************** PP

                DUF260  85 qqleqlkaelallke 99 
                           +ql+q ++e++l ++
  PGSC0003DMP400022411  93 WQLCQNAVEAVLKGT 107
                           ********9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.5583109IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKN PDSQSNATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EAVLKGTPIT PIASEIAVNN  120
NGPPLKLPYD IRHINKDENS TKSSELHRVR TRCRFKRSGA NTKATKSNPV CSGSGDEFAH  180
EKVNGSTSHE SSLSHQSEEE AAAVAVALNV ECESPEMAEV EDSAKADGEV ELELTLGFSS  240
LGTVEGKPKE TKRNKGVQLV DGAGECKIEL GLH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022411
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363116.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8864e-93LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM1AYC30.0M1AYC3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000329380.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-88LOB domain-containing protein 41
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]