 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PGSC0003DMP400022333 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
NAC |
| Protein Properties |
Length: 394aa MW: 43767.5 Da PI: 5.1035 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400022333 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 103 | 3.9e-32 | 55 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra. 77
lp+G++F+P+d elv e+L++k+ + + + +i+++d i++++P++Lp +k++ ++++fF + ++yatgkrk+r+
PGSC0003DMP400022333 55 LPVGVKFDPSDAELV-EHLEAKCGVGNseqH---KfideFIPTLDvhegICYTHPENLP-GAKKDGSSIHFFYRITNAYATGKRKRRKi 138
799************.99****887773442...3222245555555559*********.556778899******************86 PP
NAM 78 .......tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
++ +W++tgk+k v++ +g ++g+kk++v+y+ + +k ekt+Wvmh+y+l
PGSC0003DMP400022333 139 hdennlmKEHVRWHKTGKTKVVME-NGFQKGCKKVMVLYQTikKGSKQEKTNWVMHQYHL 197
777777666999**********99.999***********6433777888*********98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 394 aa
Download sequence Send
to blast |
MGRSWLINGR GLASKVKNAS APAAHQIKDC GAKRQCPNCH YSIDNKDVSH EWPGLPVGVK 60
FDPSDAELVE HLEAKCGVGN SEQHKFIDEF IPTLDVHEGI CYTHPENLPG AKKDGSSIHF 120
FYRITNAYAT GKRKRRKIHD ENNLMKEHVR WHKTGKTKVV MENGFQKGCK KVMVLYQTIK 180
KGSKQEKTNW VMHQYHLGPD EDEKEGEYVV SKILYQQQKQ SVKANDSSDN EEASVGANQT 240
GPTTPKTVTP NPPRDGETPS YDDIVDDSLP FSPDQEVEVA KEPGQPSDAK IKCEMEYTTC 300
LAGESQAADA NDVDNSLLCD EHNDYSFLDS FGPNLGPSAD YTHSTCHLPQ ENGNTTCGIS 360
ELDNLEPDSP PDFQLADLPF GSQENIFSWL DRL*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC215373 | 0.0 | AC215373.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0064B17, complete sequence. |
| GenBank | AC215453 | 0.0 | AC215453.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0034H10, complete sequence. |
| GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
| Publications
? help Back to Top |
- Xu X, et al.
Genome sequence and analysis of the tuber crop potato.
Nature, 2011. 475(7355): p. 189-95
[PMID:21743474] - Yi D, et al.
The Arabidopsis SIAMESE-RELATED cyclin-dependent kinase inhibitors SMR5 and SMR7 regulate the DNA damage checkpoint in response to reactive oxygen species.
Plant Cell, 2014. 26(1): p. 296-309
[PMID:24399300] - Biever JJ,Brinkman D,Gardner G
UV-B inhibition of hypocotyl growth in etiolated Arabidopsis thaliana seedlings is a consequence of cell cycle arrest initiated by photodimer accumulation.
J. Exp. Bot., 2014. 65(11): p. 2949-61
[PMID:24591052] - Hu Z,Cools T,Kalhorzadeh P,Heyman J,De Veylder L
Deficiency of the Arabidopsis helicase RTEL1 triggers a SOG1-dependent replication checkpoint in response to DNA cross-links.
Plant Cell, 2015. 27(1): p. 149-61
[PMID:25595823] - Chen P,Umeda M
DNA double-strand breaks induce the expression of flavin-containing monooxygenase and reduce root meristem size in Arabidopsis thaliana.
Genes Cells, 2015. 20(8): p. 636-46
[PMID:26033196] - Sjogren CA,Bolaris SC,Larsen PB
Aluminum-Dependent Terminal Differentiation of the Arabidopsis Root Tip Is Mediated through an ATR-, ALT2-, and SOG1-Regulated Transcriptional Response.
Plant Cell, 2015. 27(9): p. 2501-15
[PMID:26320227] - Yoshiyama KO
SOG1: a master regulator of the DNA damage response in plants.
Genes Genet. Syst., 2016. 90(4): p. 209-16
[PMID:26617076] - Weimer AK, et al.
The plant-specific CDKB1-CYCB1 complex mediates homologous recombination repair in Arabidopsis.
EMBO J., 2016. 35(19): p. 2068-2086
[PMID:27497297] - Davis OM,Ogita N,Inagaki S,Takahashi N,Umeda M
DNA damage inhibits lateral root formation by up-regulating cytokinin biosynthesis genes in Arabidopsis thaliana.
Genes Cells, 2016. 21(11): p. 1195-1208
[PMID:27658920] - Pedroza-García JA, et al.
Function of the Plant DNA Polymerase Epsilon in Replicative Stress Sensing, a Genetic Analysis.
Plant Physiol., 2017. 173(3): p. 1735-1749
[PMID:28153919] - Horvath BM, et al.
Arabidopsis RETINOBLASTOMA RELATED directly regulates DNA damage responses through functions beyond cell cycle control.
EMBO J., 2017. 36(9): p. 1261-1278
[PMID:28320736] - Sjogren CA,Larsen PB
SUV2, which encodes an ATR-related cell cycle checkpoint and putative plant ATRIP, is required for aluminium-dependent root growth inhibition in Arabidopsis.
Plant Cell Environ., 2017. 40(9): p. 1849-1860
[PMID:28556304] - Yoshiyama KO,Kaminoyama K,Sakamoto T,Kimura S
Increased Phosphorylation of Ser-Gln Sites on SUPPRESSOR OF GAMMA RESPONSE1 Strengthens the DNA Damage Response in Arabidopsis thaliana.
Plant Cell, 2017. 29(12): p. 3255-3268
[PMID:29208704] - Johnson RA, et al.
SUPPRESSOR OF GAMMA RESPONSE1 Links DNA Damage Response to Organ Regeneration.
Plant Physiol., 2018. 176(2): p. 1665-1675
[PMID:29222192] - Ogita N, et al.
Identifying the target genes of SUPPRESSOR OF GAMMA RESPONSE 1, a master transcription factor controlling DNA damage response in Arabidopsis.
Plant J., 2018. 94(3): p. 439-453
[PMID:29430765] - Cao X, et al.
Roles of MSH2 and MSH6 in cadmium-induced G2/M checkpoint arrest in Arabidopsis roots.
Chemosphere, 2018. 201: p. 586-594
[PMID:29533809]
|
