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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400021797 | ||||||||
Common Name | LOC102581040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 229aa MW: 26170.6 Da PI: 9.2194 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102 | 3.5e-32 | 149 | 207 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s++prsYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+ PGSC0003DMP400021797 149 LDDGFKWRKYGQKAVKNSTHPRSYYRCTHHTCNVKKQIQRLSKDTSIVVTTYEGIHNHP 207 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-32 | 136 | 207 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-28 | 141 | 208 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.116 | 144 | 209 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.9E-37 | 149 | 208 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-25 | 150 | 207 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MHYNNSTLLS MDAREELPPP PPPPLPPLTL LSPANFFMQQ PNDQLAMQNN CNSSQVGLIC 60 DNIDWAGLLS GSSSINNNNE SIATTSNVSI NPRNMNMNMN TNTNMNMMEG GEQHQQQLQE 120 HNFRRDKGRK RKYVPPRVAF HTRSTEDILD DGFKWRKYGQ KAVKNSTHPR SYYRCTHHTC 180 NVKKQIQRLS KDTSIVVTTY EGIHNHPCEK LMETLSPILK QLQFLSRF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-24 | 137 | 206 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400021797 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006343925.1 | 1e-172 | PREDICTED: probable WRKY transcription factor 56 | ||||
TrEMBL | M1AWU5 | 1e-171 | M1AWU5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400032090 | 1e-172 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6374 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64000.1 | 1e-56 | WRKY DNA-binding protein 56 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400021797 |
Entrez Gene | 102581040 |
Publications ? help Back to Top | |||
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