PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021643
Common NameLOC102587130
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRF
Protein Properties Length: 423aa    MW: 45990.9 Da    PI: 7.7117
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021643genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.98.5e-24132175144
                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                           d+ep+rC+RtDGKkWRCsr+v +++k+CErH h+++ rsrk++e
  PGSC0003DMP400021643 132 DPEPWRCKRTDGKKWRCSRDVTPDQKYCERHAHKSKPRSRKPVE 175
                           79***************************************987 PP
2QLQ33.61.2e-1279109232
                   QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 
                           +FTa+Qlq++ +Q  + Ky++a++PvPp+Ll
  PGSC0003DMP400021643  79 PFTASQLQEFQRQFIICKYIMASMPVPPHLL 109
                           9*****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009510.002278114IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166615.36379114IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.1E-1079109IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.665132176IPR014977WRC domain
PfamPF088793.3E-19133175IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGNGENTEFL DLKMKTSEAS YPYKRTMFMA PSSHPHFFSP YEKETGDDGG SGPGNFVGSD  60
VVSALSSRPC ARGSMGLAPF TASQLQEFQR QFIICKYIMA SMPVPPHLLP TNPSPAQSNT  120
TGLDLKFSSG SDPEPWRCKR TDGKKWRCSR DVTPDQKYCE RHAHKSKPRS RKPVEIHTNR  180
HPPIPKSNNN SHSFQFPTVQ LSAPSGDQTS PRCIEWLGRG DTSRTIPVVN TCNQQLMHSS  240
SGMGFNNDQN RRNSPAFQVQ DAPKVYPMNF NQYMCNSSSD QALGSQLKNE QGNNSIIGRG  300
TTRNAWPKDG LSDGISNNGS FTSLTLSMSG WNRGMDDDNE HAQVSIGMLD SERSGDDVLR  360
SQWLNPVSWM SSTAPGGPLG EALCLGNASS LPSPHGYSNS TATSSCSFGS CENGSHGPDF  420
IG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400021643
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092611e-158AP009261.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0005L01, complete sequence.
GenBankAP0092801e-158AP009280.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0201M14, complete sequence.
GenBankHG9755201e-158HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343776.10.0PREDICTED: growth-regulating factor 8-like
TrEMBLM1AWF80.0M1AWF8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000318930.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125171820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.15e-40growth-regulating factor 8
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]