PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020762
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 399aa    MW: 44902 Da    PI: 8.4261
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020762genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.31.8e-14118169455
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                           +kr+rr+++NR +A+rsR+RK+a+++eLe   ++   eN++Lk  lee k+e
  PGSC0003DMP400020762 118 DKRQRRMIRNRASAQRSRARKQAYTAELEAQLDQVRDENERLKLLLEEKKEE 169
                           7*****************************************9777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-9113193IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.99117169IPR004827Basic-leucine zipper domain
PfamPF001703.4E-11118169IPR004827Basic-leucine zipper domain
CDDcd147071.54E-14119158No hitNo description
Gene3DG3DSA:1.20.5.1704.6E-12119169No hitNo description
SuperFamilySSF579594.75E-11119168No hitNo description
PROSITE patternPS000360122137IPR004827Basic-leucine zipper domain
Gene3DG3DSA:3.30.190.201.9E-25197251IPR016094Ribosomal protein L1, 2-layer alpha/beta-sandwich
CDDcd004031.30E-42200363IPR028364Ribosomal protein L1/ribosomal biogenesis protein
PfamPF006871.9E-25214364IPR028364Ribosomal protein L1/ribosomal biogenesis protein
SuperFamilySSF568088.37E-44216365IPR023674Ribosomal protein L1-like
Gene3DG3DSA:3.40.50.7905.9E-38253345IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwich
Gene3DG3DSA:3.30.190.201.9E-25346365IPR016094Ribosomal protein L1, 2-layer alpha/beta-sandwich
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0015934Cellular Componentlarge ribosomal subunit
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDVSEDESVG CYKVEPPQVQ EGSSDNLPDN ASLNELFSHF YQPEGNEVGS NSTLDEGLDF  60
SYGADQIFEQ AADDLNENDE IAPARGNAEN PNSDGSEAAG GGNRRRRAAT VEEETLMDKR  120
QRRMIRNRAS AQRSRARKQA YTAELEAQLD QVRDENERLK LLLEEKKEEP TEPTKAQWTM  180
ANKLKKLRKS VSCKLQSDAL REAITVIKND SSEKKRKFTE TIELQIGLKN YDPQKDKRFS  240
GSVKLPHIPR PKMKICMLGD AQHVGEAEKI GLEYMDVEGL KKLNKNKKLV KKLAKKYHAF  300
LASEAVIKQI PRLLGPGLNK AGKCSKFPTL VSHQESLESK VNETKATIKF QLKKVLCMGV  360
AVGEMLVLEE YHGKDSTHLL RILYYNLGSF RHFDLYAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_LA8e-891943653171Ribosomal protein
4v7e_Cz8e-89194365317160S ribosomal protein L1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280291KKLNKNKKLVKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020762
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM1AUG50.0M1AUG5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000305850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1843744
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]