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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400020614 | ||||||||
Common Name | LOC107063305 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HB-other | ||||||||
Protein Properties | Length: 188aa MW: 21884.6 Da PI: 4.3042 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 44.7 | 2.4e-14 | 29 | 69 | 11 | 51 |
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNr 51 +e Lee+F ++++p + +e+L+++lgL+++qVk+WF N+ PGSC0003DMP400020614 29 IIEKLEEVFSQKPNPENDVIEQLSEELGLDTTQVKIWFYNK 69 5799***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 4.3E-6 | 18 | 80 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.01E-11 | 26 | 79 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-12 | 27 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.51E-10 | 27 | 77 | No hit | No description |
Pfam | PF00046 | 9.5E-12 | 28 | 69 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 11.402 | 30 | 76 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MASQIDASVG STSGQEIGKS NFQHSYEQII EKLEEVFSQK PNPENDVIEQ LSEELGLDTT 60 QVKIWFYNKG YYIKAQQIMK EESEIDRLKN KIMYSENFQI CLDLKEQFCA ASNNPEQQRA 120 ILRDLLNEYA KFGEDVMMIS KIIDHFIEYI EGYHMFFSEF ESKLDNLYNY KDPNGLDLEL 180 RLGLKCD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400020614 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 2e-74 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015170488.1 | 1e-136 | PREDICTED: homeobox-leucine zipper protein ROC3-like | ||||
TrEMBL | M1AU40 | 1e-134 | M1AU40_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400030361 | 1e-135 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15229 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 6e-11 | homeobox-7 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400020614 |
Entrez Gene | 107063305 |
Publications ? help Back to Top | |||
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