PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

PGSC0003DMP400020150

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

DBB

Protein Properties

Length: 275aa MW: 30724.7 Da PI: 5.0174

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400020150	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.8	3.9e-07	21	63	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 + C+ ++++ + l+C+ ++ lC +C e H+ Ht+ PGSC0003DMP400020150 21 RHLCDFCGNNTALLYCRADSAKLCFTCDREVHSTnqlftkHTR 63 679*****************************66778888875 PP
2	zf-B_box	23.9	8.9e-08	66	107	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 C+++++ ++++ C + ++ lC++C e+H+ H+++pl PGSC0003DMP400020150 66 LCNLCDSSPASILCCTESSVLCQNCDWESHNKqlslHERRPL 107 6*****************************779999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.452	19	66	IPR000315	B-box-type zinc finger
SMART	SM00336	1.5E-13	19	66	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.9E-6	21	63	IPR000315	B-box-type zinc finger
CDD	cd00021	1.73E-6	23	63	No hit	No description
PROSITE profile	PS50119	9.769	62	107	IPR000315	B-box-type zinc finger
CDD	cd00021	1.31E-4	66	107	No hit	No description
SMART	SM00336	0.31	67	107	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MTELKKDQEN HQQQQQEPQR RHLCDFCGNN TALLYCRADS AKLCFTCDRE VHSTNQLFTK 60 HTRWLLCNLC DSSPASILCC TESSVLCQNC DWESHNKQLS LHERRPLEGF SGCPSVSELL 120 SILGFEDLGK KELLYGGDGS YGFSDWVIWD TPSVVSLDDL IANNDSEHNF QAIGVPPLPK 180 NRNAACGKHK EEILSQLREL SKLEPNSGDD QDETVPTIGF QSMEPVQNCP LRFKGLGFMQ 240 NSDQHVVPSS EVKVISFSVT PLIVVKCLIC VTFV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400020150

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013685	0.0	BT013685.1 Lycopersicon esculentum clone 132507F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006359430.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 13
Swissprot	O82256	4e-69	COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBL	M1AT28	0.0	M1AT28_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400029591	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.2	4e-70	B-box type zinc finger protein with CCT domain

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400020150

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]