PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400019928
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 698aa    MW: 76780.8 Da    PI: 5.5856
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400019928genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.3e-204398156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          +++ +++t++q++eLe++F+++++p+ ++r++L k+lgL+  qVk+WFqN+R+++k
  PGSC0003DMP400019928 43 KKQYHRHTQHQIQELESFFKECPHPDDKQRKDLGKRLGLEPLQVKFWFQNKRTQMK 98
                          688999***********************************************998 PP
2START205.22.6e-642214431206
                           HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS
                 START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla. 77 
                           ela +a++el+++a+ +ep+W  s         +n++e+ ++f+++ +      ++ea+r+s++v+ + ++lve+l+d++ qW++ ++ 
  PGSC0003DMP400019928 221 ELAVSAMEELIRLAQTGEPLWINSDnnnndnVLLNEEEYARTFPRGIGpkslaLKSEASRESALVIINYVNLVEILMDVN-QWTNFFTg 308
                           57899********************88887777899999999999998********************************.******** PP

                           ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEE CS
                 START  78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliep 156
                              ka++lev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+g+g+w++vdvS+++ ++ +    v R++++pSg++i++
  PGSC0003DMP400019928 309 ivsKATILEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHGDGTWAVVDVSLENLRSTS----VSRCRRRPSGCVIQE 393
                           ******************************************************************9965....8************** PP

                           ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                 START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                           ++ng+skvtw+ehv++++r + +++r+lv sgla+gak+wvatl+rqce+
  PGSC0003DMP400019928 394 LPNGYSKVTWIEHVEVDDRAVNNIYRPLVDSGLAFGAKRWVATLERQCER 443
                           ************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-212794IPR009057Homeodomain-like
SuperFamilySSF466899.61E-1929100IPR009057Homeodomain-like
PROSITE profilePS5007116.64940100IPR001356Homeobox domain
SMARTSM003893.6E-1842104IPR001356Homeobox domain
PfamPF000467.6E-184398IPR001356Homeobox domain
CDDcd000861.00E-1743101No hitNo description
PROSITE profilePS5084847.685212446IPR002913START domain
SuperFamilySSF559619.62E-39213445No hitNo description
CDDcd088753.61E-121216442No hitNo description
SMARTSM002342.9E-60221443IPR002913START domain
PfamPF018521.6E-54222443IPR002913START domain
Gene3DG3DSA:3.30.530.204.8E-7292443IPR023393START-like domain
SuperFamilySSF559616.05E-25461689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MTRKTPENEL DLIRDDEFET KSGTDIMEGA SGDDQDPNKR PKKKQYHRHT QHQIQELESF  60
FKECPHPDDK QRKDLGKRLG LEPLQVKFWF QNKRTQMKSQ HERHENTQLR NENDKLRAEN  120
IRYKEALTTA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISGIAA KYVGKPMLNY  180
PQLPSLGGHQ LGEMFTTTTT GGDLLRSISG PSDADKPIVI ELAVSAMEEL IRLAQTGEPL  240
WINSDNNNND NVLLNEEEYA RTFPRGIGPK SLALKSEASR ESALVIINYV NLVEILMDVN  300
QWTNFFTGIV SKATILEVLS TGVAGNYNGA LQVMTAEFQV PSPLVPTREN YFVRYCKQHG  360
DGTWAVVDVS LENLRSTSVS RCRRRPSGCV IQELPNGYSK VTWIEHVEVD DRAVNNIYRP  420
LVDSGLAFGA KRWVATLERQ CERLASVMAS NIPTGDVITS PEGRKSMLKL AERMVMSFCA  480
GVGASTAHTW TTLSGSGADD VRVMTRKSID DPGRPPGIVL SAATSFWMPV PTKRVFDFLR  540
DENSRNEWDI LSNGGLVQEM AHIANGRDSG NSVSLLRVNS GNSSQNNMLI LQESCLDTTG  600
SYVIYAPVDI AAMNVVLSGG DPDYVALLPS GFAILPDGSS NAENSNAAGG SLLTVAFQIL  660
VDSVPTAKLS LGSVATVNSL IKCTVERIKA SITCEIA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400019928
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352605.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
RefseqXP_006352606.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
RefseqXP_015166477.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
RefseqXP_015166478.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
RefseqXP_015166479.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
RefseqXP_015166480.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLM1ASJ00.0M1ASJ0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000292910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]