PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400019571
Common NameLOC107061404
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 323aa    MW: 36547.2 Da    PI: 5.0464
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400019571genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000162446123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C+ C++ Fs+   L  H++ H
  PGSC0003DMP400019571 24 YRCSFCKRGFSNAQALGGHMNIH 46
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.77E-62250No hitNo description
Gene3DG3DSA:3.30.160.605.2E-42248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4682451IPR007087Zinc finger, C2H2
SMARTSM003550.00532446IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEKSDQIVTW SSEELLGLGN VKFYRCSFCK RGFSNAQALG GHMNIHRRDR ARLREFSSDQ  60
NLLSLDIKNS VYPPPPRPPP GNDELLQREV SLYDEGIICS PSKRPCVKVM SCDHNPPPLP  120
PALPHDVLLQ REESSYGETI ISSPLKRPCV KVSCDHNPPP RPPPHALPHD VLLQREVLSS  180
YDETIISSPS KRPCFTYDQE KDHYDHSLSL VNDDSLQREV SSYDETIISS SSKRPCVTYD  240
EENDHLITSK VNYYDHNQEV IIGDLLQLPL FKETPLIKEA SKCLENEKVE NKGILEQNHV  300
SILDLELRLG MEPPESLTET DP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400019571
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166079.10.0PREDICTED: uncharacterized protein LOC107061404
TrEMBLM1ARP50.0M1ARP5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000287830.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1866333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.14e-14C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]