PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400019408
Common NameLOC102603993
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 468aa    MW: 52047.6 Da    PI: 9.9633
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400019408genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.1e-31194250360
                           -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           DgynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers  d ++ ei+Y+geHnh+k
  PGSC0003DMP400019408 194 DGYNWRKYGQKQVKGSEYPRSYYKCTHLKCPVKKKVERSY-DAQIAEIVYRGEHNHPK 250
                           9***************************************.***************85 PP
2WRKY99.62e-31386442258
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                           dDg++WrKYGqK+vkgs +prsYYrCts++C+++k ver+ +dpk++++tYeg+Hnh
  PGSC0003DMP400019408 386 DDGFRWRKYGQKVVKGSSYPRSYYRCTSPKCSMRKFVERTMDDPKAFITTYEGKHNH 442
                           8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-29182251IPR003657WRKY domain
SuperFamilySSF1182904.97E-25191251IPR003657WRKY domain
SMARTSM007745.2E-35192250IPR003657WRKY domain
PROSITE profilePS5081124.03194251IPR003657WRKY domain
PfamPF031061.3E-24194249IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-31376445IPR003657WRKY domain
SuperFamilySSF1182904.71E-27380445IPR003657WRKY domain
PROSITE profilePS5081132.179380445IPR003657WRKY domain
SMARTSM007741.5E-34385444IPR003657WRKY domain
PfamPF031065.0E-25386442IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEVNETAKIA IVRPVASRPR CPIYKSFSEL LAGAVDISST NARSEMAITA IRPKTVRLKP  60
VTNHALVGER SSQIGVSEAP VGCRSDYILQ SVEKPKVLYK PIAKLAPRKT IPLLENKGSS  120
VSDQRREKAE TKAGVQSANE VKQHRDLTTE SKRSLLAKSG EDKKIVGSTI VSESTEEVPQ  180
SLINTSNVDR PSYDGYNWRK YGQKQVKGSE YPRSYYKCTH LKCPVKKKVE RSYDAQIAEI  240
VYRGEHNHPK PQPPKRNLSD VHVRAAVCND TSKETNNPAW SNQHPQTSEA YVYRIENQND  300
FGLTIHSAHS SKAPCFYDPI AAAGMLTVVG NSEDSAEGSK KLETTCDEPK TKRRKLKGQC  360
NGAGTSGEST FPYIPNQSTT DSEITDDGFR WRKYGQKVVK GSSYPRSYYR CTSPKCSMRK  420
FVERTMDDPK AFITTYEGKH NHVVPNRRPN SEASKTSSKS SAMKEKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-29185445177Probable WRKY transcription factor 4
2lex_A4e-29185445177Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400019408
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339294.20.0PREDICTED: WRKY transcription factor 44
RefseqXP_015165027.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_015165028.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_015165029.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_015165031.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_015165033.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_015165034.10.0PREDICTED: WRKY transcription factor 44
TrEMBLM1AR980.0M1AR98_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000285300.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99512227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.12e-84WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]