PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

WOX

Protein Properties

Length: 334aa MW: 37050.1 Da PI: 7.2082

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400018963	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.4e-17	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e++++ +kl ++ +++V++WFqNr+ + k+ PGSC0003DMP400018963 22 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAKLqeygQVGDANVFYWFQNRKSRSKH 82 89***************99***********************************995 PP
2	Wus_type_Homeobox	112	3.1e-36	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq PGSC0003DMP400018963 21 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAKLQEYGQVGDANVFYWFQNRKSRSKHKQ 84 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.27E-12	14	88	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.382	18	83	IPR001356	Homeobox domain
SMART	SM00389	4.9E-9	20	87	IPR001356	Homeobox domain
CDD	cd00086	3.73E-8	21	84	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-6	21	88	IPR009057	Homeodomain-like
Pfam	PF00046	3.5E-15	22	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008284	Biological Process	positive regulation of cell proliferation
GO:0030010	Biological Process	establishment of cell polarity
GO:0048825	Biological Process	cotyledon development
GO:0090451	Biological Process	cotyledon boundary formation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MNSSIIQQRP PCNPEERSPE PKPRWNPRPE QIRILEAIFN SGMVNPPRDE IRKIRAKLQE 60 YGQVGDANVF YWFQNRKSRS KHKQRHLQAK AQQHQHQNNS SHQPIITSSS SSSDKSSPNS 120 LTFSIGTSNV MDLLNSPTSS VNQQNYNEFL SNEQPFFFTV QPPPVVPTHD HSTMSQGFCF 180 PDSTTFSPHS SSSSSGLFLN EWMGISQTPS NNSKKAENEK MNLQSQLMSY TVTSTASPLA 240 STTIPTIGHI QGVAVDPNDA GPTRSTVFIN DVAFEVGIGP FNVREVFGED AVLIHSSGEP 300 LITNEWGITI QPLQHGAFYY LLRTSSIAST HHV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400018963

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ190663	0.0	FJ190663.1 Solanum lycopersicum cultivar M82 COMPOUND INFLORESCENCE (S) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006367197.1	0.0	PREDICTED: WUSCHEL-related homeobox 9-like
TrEMBL	M1AQ95	0.0	M1AQ95_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400027850	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5942	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	8e-40	homeobox-3

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400018963

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]