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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400018923 |
Common Name | LOC102595987 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
NF-YA |
Protein Properties |
Length: 311aa MW: 33794.1 Da PI: 7.0112 |
Description |
NF-YA family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400018923 | genome | PGSC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | CBFB_NFYA | 101.6 | 7.5e-32 | 166 | 222 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
+ep+YVNaKQy++Il+RR++Rak+e ekkl +k+rkpylheSRh+hAl+R+R+sgGrF
PGSC0003DMP400018923 166 QEPVYVNAKQYHGILRRRESRAKAELEKKL-IKGRKPYLHESRHQHALKRARASGGRF 222
69****************************.**************************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0016602 | Cellular Component | CCAAT-binding factor complex |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MQSESKSANC EEARTYNVPN STLEPWWNTT GNNPVSLGLM RGSASDSPPP EQAVDGRSQS 60 DGGSNEEDDD APEKSQRTIP MHSDGSYAQV DQNLQPIAST IPPKDDGSIT QPPQLELVAH 120 SMACAPNLYV DPYYGGILAP FGQPMVPSHV LDMHHPRMPL PHEMAQEPVY VNAKQYHGIL 180 RRRESRAKAE LEKKLIKGRK PYLHESRHQH ALKRARASGG RFAKKSDAGT SKGEGSGSAV 240 SLQSVHSSGS EPLLSNAADV PEWHKDRSLA ERQHSYSNGN GYGKQSSFQE SKYQAQSAQV 300 GEGGSSGQRW *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975440 | 1e-164 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |