PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400018895
Common NameLOC102586505
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 357aa    MW: 38945.4 Da    PI: 4.8049
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400018895genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.72.4e-16215251135
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++Cgt +  Tp +Rrgp g++tLCnaCGl+++ kg+
  PGSC0003DMP400018895 215 CHHCGTNEseTPAMRRGPLGPRTLCNACGLMWANKGM 251
                           ********9************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.1E-780115IPR010399Tify domain
PROSITE profilePS5132013.45980115IPR010399Tify domain
PfamPF062007.7E-1083114IPR010399Tify domain
PROSITE profilePS5101712.689146188IPR010402CCT domain
PfamPF062033.3E-15146187IPR010402CCT domain
SMARTSM004017.5E-9209262IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-14213255IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-12213261No hitNo description
CDDcd002029.70E-16214258No hitNo description
PROSITE patternPS003440215242IPR000679Zinc finger, GATA-type
PfamPF003209.0E-14215250IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEAADNSRNM LGGQYGVVAF QQEYMNVPIR VDRYGGGGFE ADDISVGGGY EEAMSSGEEL  60
QVCSMPLVAG PVDSGRVMAV PSRTSELNIS FEGQVYVFPA VTPEKVQAVM LLLGGCEVPS  120
YVPNTDSVAL QNTKSVDNTR QNISPRMASL IRFREKKKDR CFEKTIRYAC RKEVAQRMHR  180
KNGQFASLKE GEKSSADNID SGDSAAHSEP TLRRCHHCGT NESETPAMRR GPLGPRTLCN  240
ACGLMWANKG MLRDITKGGS HVPFDKNEPG TPDIKLSTFA PENSYLKQHQ EDMQEATENF  300
ADSSPFCIGS SSVNIDEEQD NLDALANASG TEFEIPANFD EQIGIDSHMS VHWPAT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400018895
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331281e-155AC233128.10 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-245n21 map 1, complete sequence.
GenBankAC2408661e-155AC240866.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210o18 map 1, complete sequence.
GenBankHG9755131e-155HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351718.10.0PREDICTED: GATA transcription factor 24-like isoform X3
SwissprotQ8GXL74e-57GAT24_ARATH; GATA transcription factor 24
TrEMBLM1AQ460.0M1AQ46_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000277290.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-61ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]