PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400018674 | ||||||||
Common Name | LOC102584586 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 209aa MW: 23241.4 Da PI: 8.1959 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.6 | 1.7e-30 | 39 | 97 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp+kk+ver+++dp+v++itY+++Hnh+ PGSC0003DMP400018674 39 SDSCTWRKYGQKPIKGSPYPRGYYRCSSSkGCPAKKQVERCHHDPNVLIITYSSDHNHP 97 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.4E-32 | 32 | 99 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.377 | 33 | 99 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-27 | 34 | 99 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-35 | 38 | 98 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-26 | 40 | 97 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MSLPRKLSKK GAKKRVISVP IKDCDISRSN YKGDIYPPSD SCTWRKYGQK PIKGSPYPRG 60 YYRCSSSKGC PAKKQVERCH HDPNVLIITY SSDHNHPLPA ATTKHRHPTT TSASTSTDQL 120 AVFTYQPERD FIMAEVGAGE LLGCFSYVGP TLLEYCTSPT MVGSTWVDDD VAFMLPIGEE 180 DQSLYGDLGE LPECSMIFRR YNRSVDSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-20 | 14 | 99 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 4e-20 | 14 | 99 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400018674 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-173 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006364097.1 | 1e-155 | PREDICTED: probable WRKY transcription factor 65 | ||||
TrEMBL | M1APL5 | 1e-154 | M1APL5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400027378 | 1e-154 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7468 | 22 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 4e-56 | WRKY DNA-binding protein 65 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400018674 |
Entrez Gene | 102584586 |
Publications ? help Back to Top | |||
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