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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400018183 |
Common Name | LOC102596236 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
NAC |
Protein Properties |
Length: 278aa MW: 32263.2 Da PI: 5.594 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400018183 | genome | PGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 158.2 | 3.4e-49 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
lppGfrF P+deelv++yL kk++++++ ++ e+d++++ePw+Lp+++k +++ewyfFs rd+kyatg r+nrat sgyWkatgkd
PGSC0003DMP400018183 10 LPPGFRFYPSDEELVCHYLFKKIANEDVLK-GTLIEIDLHTCEPWQLPEMAKLNSSEWYFFSFRDRKYATGFRTNRATISGYWKATGKD 97
79************************9655.6799*************88888999********************************* PP
NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
++v++ +++ vg++ktLvfy +rap+g kt W+mhe+rle
PGSC0003DMP400018183 98 RTVVDPkTRTIVGMRKTLVFYMNRAPNGIKTGWIMHEFRLE 138
*****855667***************************985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 278 aa
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to blast |
MGLRDIGATL PPGFRFYPSD EELVCHYLFK KIANEDVLKG TLIEIDLHTC EPWQLPEMAK 60 LNSSEWYFFS FRDRKYATGF RTNRATISGY WKATGKDRTV VDPKTRTIVG MRKTLVFYMN 120 RAPNGIKTGW IMHEFRLENP HIPPKEDWVL CRVFHKAKAE NNNNNNNNNI FNTQNMYEVG 180 VNSSPNMDQS HIALPYAAFS QRQVGHQSQK LFDLMEPNNN QSSYVQLMSQ EMKEPQSNDE 240 MAEDDDEYGF LLDMNFEDPN LQDGSRSTAF EHWEHVI*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 5e-49 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-49 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-49 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-49 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-49 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-49 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-49 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-49 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-49 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-49 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-49 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-49 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 5e-49 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-49 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by auxin. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975448 | 1e-128 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Publications
? help Back to Top |
- Xu X, et al.
Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] - Le Hénanff G, et al.
Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Xiao D, et al.
SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] - Huo X,Wang C,Teng Y,Liu X
Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] - Chen X, et al.
Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] - Liu C,Wang B,Li Z,Peng Z,Zhang J
TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]
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