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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400018055 | ||||||||
Common Name | LOC102594182 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 26275.1 Da PI: 8.4821 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.6 | 3.8e-12 | 50 | 96 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P++ K++Ka+ L ++v +k L PGSC0003DMP400018055 50 KSHSEAERRRRQRINAHLSTLRNLVPSS-----DKMDKAALLAEVVCQVKRL 96 58*************************8.....7********9999777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.754 | 47 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.2E-13 | 50 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-9 | 50 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.09E-10 | 50 | 98 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-12 | 51 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-10 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.77E-7 | 135 | 201 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 1.3E-4 | 135 | 178 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MNLGEFCENE AKGVVQSLVL DSEKSELVKA SGRVEKKIGK SEGKTIAALK SHSEAERRRR 60 QRINAHLSTL RNLVPSSDKM DKAALLAEVV CQVKRLKETA TNVSERFFIP LDSDEIKVEI 120 IAENAIDGTC LYRASICCEY RPHLLSDLKE TINSLHVNLV KSEISTLGSR VKNVFLFTNL 180 IDGGRANTEA REIFLSSVRQ AFSCILDKVS AFPEYSAYPN KRQRISCFES SSLLF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400018055 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362421.1 | 1e-171 | PREDICTED: transcription factor bHLH30-like | ||||
TrEMBL | M1AN65 | 1e-170 | M1AN65_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400026449 | 1e-170 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6730 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 7e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400018055 |
Entrez Gene | 102594182 |
Publications ? help Back to Top | |||
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