 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PGSC0003DMP400018041 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
Trihelix |
| Protein Properties |
Length: 290aa MW: 33361.8 Da PI: 5.9068 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400018041 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 49.5 | 1.1e-15 | 24 | 114 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84
+W++q + +L++a ++ +l+rg+l++++W++vs+ + ++++ +r+ +qCk++++ l+k+yk +k+ ++ + + +s++p+f++
PGSC0003DMP400018041 24 CWSEQATWTLVDAWGRRYMELNRGNLRQKDWQQVSDSVnvlhgHSKKSRRTDVQCKNRIDTLKKKYKVEKAKIIESNGTLTSSWPFFER 112
7*****************************************99***************************999998888899*****9 PP
trihelix 85 le 86
l+
PGSC0003DMP400018041 113 LD 114
97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MGEITESSTQ VTMSSRPLPF REDCWSEQAT WTLVDAWGRR YMELNRGNLR QKDWQQVSDS 60
VNVLHGHSKK SRRTDVQCKN RIDTLKKKYK VEKAKIIESN GTLTSSWPFF ERLDVLIGNS 120
DKKVTPVMVS PLPLPMSSPP MGVPLPYRRS AMVTPVSLPQ KRQLPAFDES CFRRNYSAVA 180
AAAAAGGGEE DYDDEEEEED VEMTEESWEE DGMRRLAKAI ERFGDIYERV EGMKQRQMVE 240
LEKQRMQFAK DLEVQRMQLF MDTQVQLEKI KHTKRSGSDG IKFTPFDFS*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT3G58630.1 | 3e-32 | sequence-specific DNA binding transcription factors |
