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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400017925 |
Common Name | LOC102587836 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
GRAS |
Protein Properties |
Length: 655aa MW: 71939.7 Da PI: 6.5842 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400017925 | genome | PGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 348.2 | 1.3e-106 | 287 | 654 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
+ ++e+A+a+s++++ a ++L+rls+ a+ +g++ qRl+ay++ AL++r++ + p+ e + s e++ ++ ++evsP++
PGSC0003DMP400017925 287 QSIIEAATAISDEKNDVAVEILTRLSQVANIRGSSDQRLTAYMVAALRSRVNP----IDYPPPVLELR---SREHTDTTHNLYEVSPCF 368
6789************************************************9....55445555555...7777778888******** PP
GRAS 92 kfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
k+++++aN aIleav+ + +++H+iDfdi+qG+Q++ Ll+aLa+++ ++p+ l+iT++ +++ g e+ ++++ L+++A++lgv +
PGSC0003DMP400017925 369 KLGFMAANLAILEAVADHpfNKLHVIDFDIGQGGQYLHLLHALAAKKsNSPAVLKITAFTEQAGGVDERFNSINVELNSVANRLGVCLY 457
*****************999************************77736677*********8888************************ PP
GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
fnv ++ +++dl+ e+L ++p++alaVn++++l+rl+desv++e+ rde+L+ vk lsPkvv+vveqe++ n+++Fl+r+ ea+ +y a
PGSC0003DMP400017925 458 FNV-MSCKVTDLSRENLGLEPDDALAVNFAFKLYRLPDESVTTENLRDELLRRVKALSPKVVTVVEQEMNGNTAPFLARVNEACGHYGA 545
**9.7889********************************************************************************* PP
GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrvee 353
+fdsl+a+++r++ +r+ +E+ l+r+ +n vaceg++r+er+e ++kWr+r+++aGF+p p+s+ +a++ ++ l+ + g++v+e
PGSC0003DMP400017925 546 IFDSLDATVSRDNMDRVRIEEG-LSRKMSNSVACEGRDRVERCEVFGKWRARMSMAGFGPRPVSQIVADSLRSKLNSGTrgNPGFTVNE 633
**********************.*************************************************999876556899***** PP
GRAS 354 esgslvlgWkdrpLvsvSaWr 374
+sg +++gW++r+L+++SaWr
PGSC0003DMP400017925 634 QSGGICFGWMGRTLTVASAWR 654
********************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 655 aa
Download sequence Send
to blast |
MSSGFSGEFY GAGGSNNGRS TINNNSQRPY SSPLSGILPD PVTQIVHQGR PNLMGKRSLA 60 EFQQQQQLQF LQLQQQQQQQ KQQQQQMMLL QQQQQQGLGF YLRNVKPRSY QQSSPMSPLS 120 PVDFSVAAAA ASSISSEFSS NSNVSTMMNT RHALPVHQQF RSQPANIGGF LSPGIQNYST 180 GVSSLNPVQN RATIGVQELL SQESDKKMMN CLQEIEKQLL DDNDEEEGDT VSVVTNNEWS 240 ETIQNLISPC HNQNQNQIQK LASLSPSSST SSCASSTESP SISCPKQSII EAATAISDEK 300 NDVAVEILTR LSQVANIRGS SDQRLTAYMV AALRSRVNPI DYPPPVLELR SREHTDTTHN 360 LYEVSPCFKL GFMAANLAIL EAVADHPFNK LHVIDFDIGQ GGQYLHLLHA LAAKKSNSPA 420 VLKITAFTEQ AGGVDERFNS INVELNSVAN RLGVCLYFNV MSCKVTDLSR ENLGLEPDDA 480 LAVNFAFKLY RLPDESVTTE NLRDELLRRV KALSPKVVTV VEQEMNGNTA PFLARVNEAC 540 GHYGAIFDSL DATVSRDNMD RVRIEEGLSR KMSNSVACEG RDRVERCEVF GKWRARMSMA 600 GFGPRPVSQI VADSLRSKLN SGTRGNPGFT VNEQSGGICF GWMGRTLTVA SAWR*
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