PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400017878
Common NameLOC102577475
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 739aa    MW: 80706.6 Da    PI: 7.2475
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400017878genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.5e-095305671954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  PGSC0003DMP400017878 530 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 567
                           664559******************************88 PP
2BELL121.43.9e-39391462172
                  BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai  q+
  PGSC0003DMP400017878 391 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIGAQL 462
                           589*****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.1E-75326460IPR006563POX domain
PfamPF075266.9E-52331458IPR006563POX domain
PROSITE profilePS5007112.568508571IPR001356Homeobox domain
CDDcd000865.35E-13511572No hitNo description
SMARTSM003892.0E-9511575IPR001356Homeobox domain
SuperFamilySSF466894.71E-17513578IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28514577IPR009057Homeodomain-like
PfamPF059203.7E-18528567IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MGIATQPITS RPCHKYPVIH QVAENLNSMS QDYHHHSLFS FPNGFERSQA EQQHQQQQQQ  60
HQQHMAAQQI RRDKLRVQGF EPFEEETSTV YETAGMLSEM FNFPPGTTAT NAAELLETQF  120
NPNFRQPNPR PQQIHAAAMG NEWFGNHRQG MVVGGGASSQ QLGYAKNHTP NAAESMQLFL  180
MNPQPRSPSP SPPNSTSSTL HMLLPNPSST STLQGFPNPA EGSFGQFMTW GNGGASAATA  240
THHLNAQNEI GGVNVVESQG LSLSLSSSLQ HKAEELQMSG EAGGMLFFNQ GGSSTSGQYR  300
YKNLNMGGSG VSPNIHQVHV GYGSSLGVVN VLRNSKYAKA AQELLEEFCS VGRGKLKKNN  360
NKAAANNPNT NPSGANNEAS SKDVPTLSAA DRIEHQRRKV KLLSMLDEVD RRYNHYCEQM  420
QMVVNSFDLV MGFGAAVPYT ALAQKAMSRH FRCLKDAIGA QLKQCCELLG EKDAGTSGLT  480
KGETPRLKML EQSLRQQRAF HQMGMMEQEA WRPQRGLPER SVNILRAWLF EHFLHPYPSD  540
ADKHLLARQT GLSRNQVSNW FINARVRLWK PMVEDMYQQE AKDGDGDGDE KSQSQNSGNN  600
IIAQTPTPNS LTNSSSTNMT TTTTTAPTTT TALAAAETGT AATPITVTSS KRSQINATDS  660
DPSLVAINSF SENQATFPTN IHDPDACRRG NFSGDDGTTT HDHMGSTMIR FGTTAGDVSL  720
TLGLRHAGNL PENTHFFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16517574562Homeobox protein Meis2
3k2a_B4e-16517574562Homeobox protein Meis2
4xrm_A4e-16517574562Homeobox protein Meis2
4xrm_B4e-16517574562Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400017878
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4066990.0AF406699.1 Solanum tuberosum BEL1-related homeotic protein 13 (Bel13) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338267.10.0PREDICTED: BEL1-like homeodomain protein 2
RefseqXP_006338268.10.0PREDICTED: BEL1-like homeodomain protein 2
SwissprotQ9SW801e-171BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLM1AMS70.0M1AMS7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000261720.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33412139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-146BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Chen H,Rosin FM,Prat S,Hannapel DJ
    Interacting transcription factors from the three-amino acid loop extension superclass regulate tuber formation.
    Plant Physiol., 2003. 132(3): p. 1391-404
    [PMID:12857821]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]