PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400017689
Common NameLOC102588102
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 290aa    MW: 32785.9 Da    PI: 5.3607
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400017689genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.27.5e-08128169445
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                           +k+ +r  +NR AA rsR+RKk ++  Le k+  +e+e k+L
  PGSC0003DMP400017689 128 DKKRKRQLRNRDAAVRSRERKKLYVRDLELKSRYFESECKRL 169
                           799**********************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.5E-10125188No hitNo description
SMARTSM003388.8E-4125189IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.358127169IPR004827Basic-leucine zipper domain
PfamPF077161.6E-4128169IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-10129186No hitNo description
CDDcd147049.14E-15130181No hitNo description
PROSITE patternPS000360132147IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MVDNFDDIIN WDDVDHIFHN VLDNPHNDDQ FTLHDSSPQT FQQIEQLLMN DDDVGLVSFE  60
DADPQFAADF LSDVLVDSPL HSDHSHSPAE QAIGFTDSKV SSGSDADQDK HKSPSDGDDE  120
LNNHDPVDKK RKRQLRNRDA AVRSRERKKL YVRDLELKSR YFESECKRLG FVLQCCLAEN  180
QALRFSLQNS SANGVSMTKQ ESAVLLLESL LLGSLLWFLG ITCLLILPSQ TWSVPEENQG  240
SRNHGLLLPI KEGKKISWIL LFLSFMMGKR CKASRSRMKF NPHSLGVVM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129148KRKRQLRNRDAAVRSRERKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400017689
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5260160.0EU526016.1 Solanum chacoense bZIP transcription factor protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342192.10.0PREDICTED: bZIP transcription factor 60
TrEMBLM1AMC80.0M1AMC8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000259210.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71012128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.12e-23basic region/leucine zipper motif 60
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]