PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400016866 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 104aa MW: 11866.6 Da PI: 10.3177 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.4 | 1.7e-15 | 10 | 76 | 17 | 87 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +lp +f++++g+ + +++l de+ rsW+v l +++ ++ +++GW +F +ang+++gD+ F+l+++ PGSC0003DMP400016866 10 YLPMDFVKSNGLMIR--SEMILIDEKQRSWSVWL--GRTGHQFGIKRGWTQFRNANGIQVGDTYKFELINN 76 89********88844..48***************..*******************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.492 | 1 | 87 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-9 | 7 | 90 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-16 | 8 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-18 | 8 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.9E-13 | 9 | 77 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.28E-13 | 10 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MLNWDKFEQY LPMDFVKSNG LMIRSEMILI DEKQRSWSVW LGRTGHQFGI KRGWTQFRNA 60 NGIQVGDTYK FELINNGTIP IAHVNILGVK DANRQASQKP LTG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400016866 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-119 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168739.1 | 1e-60 | PREDICTED: B3 domain-containing protein REM14-like | ||||
TrEMBL | M1AKH7 | 9e-71 | M1AKH7_SOLTU; Uncharacterized protein | ||||
STRING | Solyc08g006230.2.1 | 8e-48 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 2e-15 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400016866 |
Publications ? help Back to Top | |||
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