PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016864
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 426aa    MW: 49852.8 Da    PI: 8.9366
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016864genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.4e-122504399
                          S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                          g++W vk+  ++ +    l++GW++F+++++L+ gDf+vFk++g++ef   v++f++
  PGSC0003DMP400016864  2 GKKWLVKV--NGWR----LEEGWEKFAEEHDLQLGDFLVFKHEGDMEF--EVSIFDS 50
                          89999999..6665....9***********************999999..9999986 PP
2B356.36e-1894184599
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                            +++++ ++g l+lpk+fa e+g+ + ++ +++++de+ rsW+++l    +++r+ l +GW+eF  an+L++gD ++F+++  +++++ 
  PGSC0003DMP400016864  94 IVRPNYISNGYLRLPKHFAMENGLFN-KKCDVIIRDERQRSWNLRL--ATHDCRVHLLGGWREFRVANDLNAGDYMMFEVIA-NGEKPI 178
                           567889999*************6664.3459***************..99999977888********************998.666678 PP

                           EEEE-S CS
                    B3  94 vkvfrk 99 
                            k+++k
  PGSC0003DMP400016864 179 WKFRDK 184
                           888776 PP
3B353.64e-17218297891
                           -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                    B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                           ++ l+++ ++lp+ fa+++g+++++   l+++de+ rsW++++  + ++ +++++kGW++F  +n+LkegD ++F+++ + +++
  PGSC0003DMP400016864 218 PYCLSRNYFRLPRGFARANGLINKK-CGLVIRDERQRSWNLRI--DTYGYGVYIAKGWRKFRVENDLKEGDCMMFEVVTN-GEK 297
                           57789999***********777544.47***************..*******************************8764.333 PP
4B347.62.9e-15320402689
                           ..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                    B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                           ++++ l ++ l++p k a ++g+ +++  +l+++d ++ rsW+vkl  r  ++++ +++GW++F +an LkegD ++F+++++ ++
  PGSC0003DMP400016864 320 VRPYCLVNDFLYIPTKIALANGLTNKKC-DLIIRDdTRERSWNVKL--RSFGSSVCIKGGWRDFRDANCLKEGDCIMFEVVSNgEK 402
                           5678888999***********8887665.6666665999*******..888889*************************9887444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.17151IPR003340B3 DNA binding domain
PROSITE profilePS5086313.789151IPR003340B3 DNA binding domain
CDDcd100179.87E-12249No hitNo description
PfamPF023622.2E-8250IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-13260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-13257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-1985182IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-1987182IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.8E-1690185IPR003340B3 DNA binding domain
PROSITE profilePS5086313.29690184IPR003340B3 DNA binding domain
PfamPF023626.2E-1694184IPR003340B3 DNA binding domain
CDDcd100178.43E-1398169No hitNo description
Gene3DG3DSA:2.40.330.104.0E-16210299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-16211303IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.4E-12211306IPR003340B3 DNA binding domain
PROSITE profilePS5086312.238211305IPR003340B3 DNA binding domain
PfamPF023622.5E-14218297IPR003340B3 DNA binding domain
CDDcd100171.25E-11219290No hitNo description
Gene3DG3DSA:2.40.330.103.9E-16313401IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-16314405IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.984315410IPR003340B3 DNA binding domain
SMARTSM010196.2E-14316410IPR003340B3 DNA binding domain
PfamPF023626.4E-13320403IPR003340B3 DNA binding domain
CDDcd100171.36E-11328395No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MGKKWLVKVN GWRLEEGWEK FAEEHDLQLG DFLVFKHEGD MEFEVSIFDS SHCDREYTEY  60
LQEGGDNAEE TFKKVEFKEA ATHNSRGQSH FQCIVRPNYI SNGYLRLPKH FAMENGLFNK  120
KCDVIIRDER QRSWNLRLAT HDCRVHLLGG WREFRVANDL NAGDYMMFEV IANGEKPIWK  180
FRDKPNPNIV STRKAFPKEE FATCSSFGQS HLECIVWPYC LSRNYFRLPR GFARANGLIN  240
KKCGLVIRDE RQRSWNLRID TYGYGVYIAK GWRKFRVEND LKEGDCMMFE VVTNGEKPIW  300
KFYGTATHKP FGQSHFVCIV RPYCLVNDFL YIPTKIALAN GLTNKKCDLI IRDDTRERSW  360
NVKLRSFGSS VCIKGGWRDF RDANCLKEGD CIMFEVVSNG EKTTWKYNGK NSRKDAKHHR  420
NQLTR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016864
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092831e-111AP009283.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence.
GenBankHG9755201e-111HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357044.10.0PREDICTED: B3 domain-containing protein REM10-like isoform X2
TrEMBLM1AKH50.0M1AKH5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000246760.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-38B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]