PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016863
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 358aa    MW: 41599.8 Da    PI: 9.3806
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016863genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.7e-1826116599
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                            ++++ l+++ l+lpk+fa e+g+ + ++ +++++de+ rsW+++l    +++r+ l +GW+eF  an+L++gD ++F+++  +++++ 
  PGSC0003DMP400016863  26 IVKPYCLTHSYLRLPKHFAMENGLFN-KKCDVIIRDERQRSWNLRL--ATHDCRVHLLGGWREFRVANDLNAGDYMMFEVIA-NGEKPI 110
                           5789999***************6664.3459***************..99999977888********************998.666678 PP

                           EEEE-S CS
                    B3  94 vkvfrk 99 
                            k+++k
  PGSC0003DMP400016863 111 WKFRDK 116
                           888776 PP
2B3543e-17150229891
                           -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                    B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                           ++ l+++ ++lp+ fa+++g+++++   l+++de+ rsW++++  + ++ +++++kGW++F  +n+LkegD ++F+++ + +++
  PGSC0003DMP400016863 150 PYCLSRNYFRLPRGFARANGLINKK-CGLVIRDERQRSWNLRI--DTYGYGVYIAKGWRKFRVENDLKEGDCMMFEVVTN-GEK 229
                           57789999***********777544.47***************..*******************************8764.333 PP
3B348.12.1e-15252334689
                           ..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                    B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                           ++++ l ++ l++p k a ++g+ +++  +l+++d ++ rsW+vkl  r  ++++ +++GW++F +an LkegD ++F+++++ ++
  PGSC0003DMP400016863 252 VRPYCLVNDFLYIPTKIALANGLTNKKC-DLIIRDdTRERSWNVKL--RSFGSSVCIKGGWRDFRDANCLKEGDCIMFEVVSNgEK 334
                           5678888999***********8887665.6666665999*******..888889*************************9887444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-1921114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-1821114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.21122116IPR003340B3 DNA binding domain
SMARTSM010195.1E-1723117IPR003340B3 DNA binding domain
PfamPF023621.4E-1526116IPR003340B3 DNA binding domain
CDDcd100173.54E-1328101No hitNo description
Gene3DG3DSA:2.40.330.103.0E-16142231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-17143235IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.4E-12143238IPR003340B3 DNA binding domain
PROSITE profilePS5086312.238143237IPR003340B3 DNA binding domain
PfamPF023621.9E-14150229IPR003340B3 DNA binding domain
CDDcd100174.87E-12151222No hitNo description
Gene3DG3DSA:2.40.330.102.9E-16245333IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-16246337IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.984247342IPR003340B3 DNA binding domain
SMARTSM010196.2E-14248342IPR003340B3 DNA binding domain
PfamPF023624.8E-13252335IPR003340B3 DNA binding domain
CDDcd100174.82E-12260327No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSSGEAFPCA EADTYNPCSL SHFECIVKPY CLTHSYLRLP KHFAMENGLF NKKCDVIIRD  60
ERQRSWNLRL ATHDCRVHLL GGWREFRVAN DLNAGDYMMF EVIANGEKPI WKFRDKPNPN  120
IVSTRKAFPK EEFATCSSFG QSHLECIVWP YCLSRNYFRL PRGFARANGL INKKCGLVIR  180
DERQRSWNLR IDTYGYGVYI AKGWRKFRVE NDLKEGDCMM FEVVTNGEKP IWKFYGTATH  240
KPFGQSHFVC IVRPYCLVND FLYIPTKIAL ANGLTNKKCD LIIRDDTRER SWNVKLRSFG  300
SSVCIKGGWR DFRDANCLKE GDCIMFEVVS NGEKTTWKYN GKNSRKDAKH HRNQLTR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016863
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-104HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168740.10.0PREDICTED: B3 domain-containing protein REM10-like isoform X1
TrEMBLM1AKH40.0M1AKH4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000246760.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.14e-27B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]