PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400016862 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 284aa MW: 32957.9 Da PI: 9.6304 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.4 | 1.3e-13 | 16 | 96 | 9 | 99 |
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +k+g + +p f+ ++ +g e+++ + + g++W++kl + ++ + ++W +Fv++n+L+ gD +vF+++g++ef v+vf+ PGSC0003DMP400016862 16 PGFKNG-IKIPIGFL-KYlKGY--EHIKRAVLKRGGKKWRIKL--NEHR---FEDGNWGKFVEENDLQLGDLLVFRHEGNMEF--EVSVFD 95 556666.99*****9.564555..4567788899*********..8887...67899*********************99999..999998 PP S CS B3 99 k 99 + PGSC0003DMP400016862 96 S 96 6 PP | |||||||
2 | B3 | 47.1 | 4.4e-15 | 143 | 221 | 6 | 87 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++++ l+++ ++lp kfa+++g+++++ l+++de+ rsW++kl + +++++++ W e +an++kegD ++Fk++ + PGSC0003DMP400016862 143 VRAYCLSKCYFRLPGKFARANGLINKK-CSLIIRDEKRRSWSLKL--YTSYSQVYIGGRWAELRDANDIKEGDHITFKVVAN 221 568999***************888544.58***************..66667889***********************7754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-19 | 3 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.88E-19 | 5 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.788 | 7 | 97 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.51E-15 | 8 | 95 | No hit | No description |
SMART | SM01019 | 3.7E-13 | 10 | 97 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-10 | 18 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-14 | 133 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.94E-16 | 136 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-8 | 138 | 232 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.011 | 138 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-13 | 142 | 222 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.32E-12 | 146 | 217 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MKIPSKKPHF FKPILPGFKN GIKIPIGFLK YLKGYEHIKR AVLKRGGKKW RIKLNEHRFE 60 DGNWGKFVEE NDLQLGDLLV FRHEGNMEFE VSVFDSSHCD REYAEYLQEE GEGGRARTVE 120 EISKEFEFKE AATRNQSHVV CKVRAYCLSK CYFRLPGKFA RANGLINKKC SLIIRDEKRR 180 SWSLKLYTSY SQVYIGGRWA ELRDANDIKE GDHITFKVVA NGEMPIWEFH TNVTEKSKCN 240 IMSSHEAFRN IEAAKNIPLS HPHFVCTMKS YYLSKCSLVS CRN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400016862 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-153 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357038.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like isoform X4 | ||||
Refseq | XP_015168733.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like isoform X1 | ||||
Refseq | XP_015168734.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like isoform X2 | ||||
Refseq | XP_015168735.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like isoform X3 | ||||
TrEMBL | M1AKH3 | 0.0 | M1AKH3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400024673 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 2e-35 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400016862 |
Publications ? help Back to Top | |||
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