PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016861
Common NameLOC102604776
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 514aa    MW: 59217.3 Da    PI: 9.9194
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016861genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3413.5e-131696999
                          HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                            +k+g + +p  f+ ++ +g   e+++  +  + g++W++kl  + ++   +  ++W +Fv++n+L+ gD +vF+++g++ef   v+vf+
  PGSC0003DMP400016861 16 PGFKNG-IKIPIGFL-KYlKGY--EHIKRAVLKRGGKKWRIKL--NEHR---FEDGNWGKFVEENDLQLGDLLVFRHEGNMEF--EVSVFD 95
                          556666.99*****9.564555..4567788899*********..8887...67899*********************99999..999998 PP

                          S CS
                    B3 99 k 99
                          +
  PGSC0003DMP400016861 96 S 96
                          6 PP
2B345.61.3e-14143221687
                           ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                           ++++ l+++ ++lp kfa+++g+++++   l+++de+ rsW++kl    + +++++++ W e  +an++kegD ++Fk++ +
  PGSC0003DMP400016861 143 VRAYCLSKCYFRLPGKFARANGLINKK-CSLIIRDEKRRSWSLKL--YTSYSQVYIGGRWAELRDANDIKEGDHITFKVVAN 221
                           558999***************888544.58***************..66667889***********************7754 PP
3B351.22.3e-16266353496
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                            +++s++l+++ l++p +fa+ +g+ + ++ t+t++d + rsW++kl    ++  +++ +GW +F+  n LkegD ++F+  + +++++
  PGSC0003DMP400016861 266 CTMKSYYLSKCSLRVPVSFARLNGLRN-RTCTITIRD-KRRSWTFKL--YARGVNTTIVGGWHKFCIVNCLKEGDYLMFEILD-NGEKP 349
                           5689****************9999885.5569**999.88*******..66666678889********************665.56666 PP

                           EEEE CS
                    B3  93 vvkv 96 
                            +k+
  PGSC0003DMP400016861 350 ILKF 353
                           7666 PP
4B345.71.1e-14413494689
                           ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           +++++  ++ l++p  fa+++g   ++ ++++l+de+ rsW v+l     s+  + +  GW++F +an++++gD+  F+l+++++
  PGSC0003DMP400016861 413 IKPYSIFKHFLYIPLAFAKSNGWM-NRRFEMILMDEQQRSWPVRL--GPVSDDhIGIHIGWQKFKEANDVQVGDIYRFELINNEK 494
                           5667777788***********654.4679****************..55555548899*********************998644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.6E-19399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-195103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.788797IPR003340B3 DNA binding domain
CDDcd100172.31E-14895No hitNo description
SMARTSM010193.7E-131097IPR003340B3 DNA binding domain
PfamPF023624.5E-101896IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.6E-14133229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-16137236IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.011138232IPR003340B3 DNA binding domain
SMARTSM010191.4E-8138232IPR003340B3 DNA binding domain
PfamPF023621.1E-12143222IPR003340B3 DNA binding domain
CDDcd100173.89E-12146217No hitNo description
SuperFamilySSF1019361.82E-19259353IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-19259354IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-16262355No hitNo description
PROSITE profilePS5086311.843263356IPR003340B3 DNA binding domain
SMARTSM010196.7E-18264357IPR003340B3 DNA binding domain
PfamPF023622.0E-14266354IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-18403501IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-18403501IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-14407502No hitNo description
PROSITE profilePS5086312.139408503IPR003340B3 DNA binding domain
SMARTSM010194.6E-12409504IPR003340B3 DNA binding domain
PfamPF023622.5E-13412494IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MKIPSKKPHF FKPILPGFKN GIKIPIGFLK YLKGYEHIKR AVLKRGGKKW RIKLNEHRFE  60
DGNWGKFVEE NDLQLGDLLV FRHEGNMEFE VSVFDSSHCD REYAEYLQEE GEGGRARTVE  120
EISKEFEFKE AATRNQSHVV CKVRAYCLSK CYFRLPGKFA RANGLINKKC SLIIRDEKRR  180
SWSLKLYTSY SQVYIGGRWA ELRDANDIKE GDHITFKVVA NGEMPIWEFH TNVTEKSKCN  240
IMSSHEAFRN IEAAKNIPLS HPHFVCTMKS YYLSKCSLRV PVSFARLNGL RNRTCTITIR  300
DKRRSWTFKL YARGVNTTIV GGWHKFCIVN CLKEGDYLMF EILDNGEKPI LKFHDMKGSA  360
SPQPEGKMVN LDAKSVSTEA TGVKIKTSYV TAPKVLPASI SANDASPHFI SIIKPYSIFK  420
HFLYIPLAFA KSNGWMNRRF EMILMDEQQR SWPVRLGPVS DDHIGIHIGW QKFKEANDVQ  480
VGDIYRFELI NNEKIPVAYF HRIYSGKDAK QSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016861
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-153HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357038.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X4
TrEMBLM1AKH20.0M1AKH2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000246730.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.12e-50B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]