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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PGSC0003DMP400016838 |
| Common Name | LOC102579016 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
WRKY |
| Protein Properties |
Length: 335aa MW: 36334.3 Da PI: 10.0853 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400016838 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 96 | 2.5e-30 | 236 | 294 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
D+y+WrKYGqK++kgs++pr+YYrC+s gCp++k+ver+++dp ++++tY geH+h
PGSC0003DMP400016838 236 ADEYSWRKYGQKPIKGSPYPRGYYRCSSVrGCPARKHVERATDDPGMLIVTYGGEHRHV 294
69*************************988****************************5 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MAVDLLNYSN INEQLAIQEA ASAGLKSMDN LIRFVSFQQQ QNQTVQPDCR EITDYTVNNF 60
RKVISILNRT GHARFRRSPV QVTDDSCTAL TLSPLTTPAE EILPAVKAPV IVPVEKYQSK 120
ALTLDFTKRK VGKSMGCEAV PVASSTTSSS FMSTITGEGS VSNGKVFSSM NLPPRPPVSS 180
GKPPIAGKRC RDHDLSDEFS GRTSSSGKCH CKKRKSRVKK VIRVPAISSK TADIPADEYS 240
WRKYGQKPIK GSPYPRGYYR CSSVRGCPAR KHVERATDDP GMLIVTYGGE HRHVQTTISG 300
NVTSAGAGAG SSGERMMAFE LTGQKNGERL GLEI*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU056915 | 0.0 | EU056915.1 Solanum tuberosum WRKY transcription factor 3 mRNA, complete cds. |
| Publications
? help Back to Top |
- Haas BJ, et al.
Full-length messenger RNA sequences greatly improve genome annotation.
Genome Biol., 2002. 3(6): p. RESEARCH0029
[PMID:12093376] - Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
Plant Methods, 2010. 6: p. 25
[PMID:21108821] - Xu X, et al.
Genome sequence and analysis of the tuber crop potato.
Nature, 2011. 475(7355): p. 189-95
[PMID:21743474] - Brand LH, et al.
Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
PLoS ONE, 2013. 8(10): p. e75177
[PMID:24146751] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ali MA,Wieczorek K,Kreil DP,Bohlmann H
The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
PLoS ONE, 2014. 9(7): p. e102360
[PMID:25033038] - Jiang CH, et al.
Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis.
J. Exp. Bot., 2016. 67(1): p. 157-74
[PMID:26433201] - Ali MA, et al.
Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
J. Plant Physiol., 2018. 226: p. 12-21
[PMID:29689430]
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