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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400016836 | ||||||||
Common Name | LOC102579016 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 257aa MW: 28068.1 Da PI: 10.3222 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 32.9 | 1.3e-10 | 236 | 256 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 D+y+WrKYGqK++kgs++pr PGSC0003DMP400016836 236 ADEYSWRKYGQKPIKGSPYPR 256 69******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.4E-16 | 188 | 233 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.9E-10 | 223 | 256 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.978 | 230 | 256 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.72E-8 | 231 | 256 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-6 | 237 | 256 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MAVDLLNYSN INEQLAIQEA ASAGLKSMDN LIRFVSFQQQ QNQTVQPDCR EITDYTVNNF 60 RKVISILNRT GHARFRRSPV QVTDDSCTAL TLSPLTTPAE EILPAVKAPV IVPVEKYQSK 120 ALTLDFTKRK VGKSMGCEAV PVASSTTSSS FMSTITGEGS VSNGKVFSSM NLPPRPPVSS 180 GKPPIAGKRC RDHDLSDEFS GRTSSSGKCH CKKRKSRVKK VIRVPAISSK TADIPADEYS 240 WRKYGQKPIK GSPYPR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400016836 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU056915 | 0.0 | EU056915.1 Solanum tuberosum WRKY transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357046.1 | 0.0 | PREDICTED: probable WRKY transcription factor 11 | ||||
Swissprot | Q9SV15 | 2e-79 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | M1AKF5 | 0.0 | M1AKF5_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1AKF7 | 0.0 | M1AKF7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400024632 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.2 | 2e-59 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400016836 |
Entrez Gene | 102579016 |