PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016592
Common NameLOC102591673
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 304aa    MW: 35091.8 Da    PI: 5.9112
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016592genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.42.4e-11175219549
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                           kr +r   NR +A+rsR RK+++i eLe+ v +L+ae + L  ++
  PGSC0003DMP400016592 175 KRIKRILANRQSAQRSRVRKLQYISELERSVTTLQAEVSVLSPRV 219
                           899*********************************988776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-13171235IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.576173225IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.21E-11175229No hitNo description
Gene3DG3DSA:1.20.5.1707.9E-12175226No hitNo description
PfamPF001708.9E-10175218IPR004827Basic-leucine zipper domain
CDDcd147031.21E-21176226No hitNo description
PROSITE patternPS000360178193IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAQLPPRVPN MIKNWPDFSP HQKIETTTVN HHHQNPSWVD EFLDFSSSKR GSHRRSISDS  60
IAFLEAPMVE ECRIRLSSSG TRTEFDRFDD EQLMSMFNND DIANNNEHNS NPSSPSDHNS  120
INHEEKKIIH GEEQPQQLKI EPEEVESSCK SDNEQNAAAD DDHVDNSSKK IVDPKRIKRI  180
LANRQSAQRS RVRKLQYISE LERSVTTLQA EVSVLSPRVA FLDHQRLVLN VDNSVLKQRI  240
AALAQDKIFK DAHQEALKRE IERLREIYYQ QNLKKMENDD DDEHPIKTQQ DVNGSEKKEQ  300
LVN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016592
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103600.0AC210360.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0184G23, complete sequence.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348841.10.0PREDICTED: basic leucine zipper 61
SwissprotQ9M2K41e-110BZP61_ARATH; Basic leucine zipper 61
TrEMBLM1AJT90.0M1AJT9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000242890.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17752465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.21e-103bZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]