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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
PGSC0003DMP400016578 |
| Common Name | LOC102578433 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
NAC |
| Protein Properties |
Length: 273aa MW: 30835.2 Da PI: 9.5219 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400016578 | genome | PGSC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 107.3 | 1.9e-33 | 40 | 180 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78
lp+G++F+P+d+e++ e+L++kv+ + + + +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r++
PGSC0003DMP400016578 40 LPAGVKFDPSDQEIL-EHLEAKVKLDAhklhplI---DefiqTLEGEnGICYTHPEKLP-GVTKDGLVRHFFHRPSKAYTTGTRKRRKV 123
799***********9.99****999884554332...122222333336**********.555566788******************74 PP
NAM 79 k......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
+ + +W++tgk+++v+ k++++g kk+Lv+y g+++k+ekt+Wvmh+y+l
PGSC0003DMP400016578 124 HtdiqgnETRWHKTGKTRPVVL-KNKVKGHKKILVLYtnYGKQRKPEKTNWVMHQYHL 180
4445455888************.8899**********6657999999*********98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 273 aa
Download sequence Send
to blast |
MTCINIDSLT SVTKIIRTCP SCGHLIKYEE KAGIHNLPGL PAGVKFDPSD QEILEHLEAK 60
VKLDAHKLHP LIDEFIQTLE GENGICYTHP EKLPGVTKDG LVRHFFHRPS KAYTTGTRKR 120
RKVHTDIQGN ETRWHKTGKT RPVVLKNKVK GHKKILVLYT NYGKQRKPEK TNWVMHQYHL 180
GDDEDEKEGE LVVSKVFYQT QPRQCGGGNN NIKNNCPPLP QVRTSINGQV GSQFVQCFNP 240
TTLISFEHNN PTMTTTPRLP NFNNLPDASF IP*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
| Publications
? help Back to Top |
- Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
Plant Physiol., 2008. 147(3): p. 1004-16
[PMID:18467456] - Xu X, et al.
Genome sequence and analysis of the tuber crop potato.
Nature, 2011. 475(7355): p. 189-95
[PMID:21743474] - Sakamoto S,Mitsuda N
Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
Plant Cell Physiol., 2015. 56(2): p. 299-310
[PMID:25535195] - Jervis J, et al.
A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
Phytochemistry, 2015. 115: p. 112-20
[PMID:25771508]
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