PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

GATA

Protein Properties

Length: 354aa MW: 38584 Da PI: 4.8652

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400016535	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49	8.3e-16	218	254	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgpdg++tLCnaCGl+++ kg+ PGSC0003DMP400016535 218 CHHCGVSEncTPAMRRGPDGPRTLCNACGLKWANKGT 254 **********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	2.0E-6	80	115	IPR010399	Tify domain
PROSITE profile	PS51320	12.369	80	115	IPR010399	Tify domain
Pfam	PF06200	5.2E-9	84	114	IPR010399	Tify domain
Pfam	PF06203	9.8E-15	145	186	IPR010402	CCT domain
PROSITE profile	PS51017	12.689	145	187	IPR010402	CCT domain
SuperFamily	SSF57716	3.47E-11	211	264	No hit	No description
SMART	SM00401	2.1E-11	212	265	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.8E-13	217	259	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.82E-15	217	260	No hit	No description
Pfam	PF00320	9.5E-14	218	254	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	218	245	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MAENPRPLQA RPYEDHAPLP SIRMVEEEEE EEDDDDGAYE DDGGEETMDE AEDVSMKVLN 60 HHQYGGQSQQ LYGGGGGVVE VSRTSELTLA FEGEVYVFPA VTPDKVQAVL LLLGGCDIPT 120 AVPTVELPFD NKVEDLPKQA NLSKRFASLV RFREKRKERC FDKKIRYSVR KEVAQRMHRK 180 NGQFASLKSS SGSSSCDSAK SSLEGYGTQH SVTVPGKCHH CGVSENCTPA MRRGPDGPRT 240 LCNACGLKWA NKGTLRDLSK AGRKTSVEPN ELVCFISKNE KYGTPDNPVK AFAEGSLDHC 300 ADLEKNLFSS GSNLENDIPV GIFSSSSNLV EQETLVGFGN ASKTEVVIPA NFD*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MAENPRPLQA RPYEDHAPLP SIRMVEEEEE EEDDDDGAYE DDGGEETMDE AEDVSMKVLN  60
HHQYGGQSQQ LYGGGGGVVE VSRTSELTLA FEGEVYVFPA VTPDKVQAVL LLLGGCDIPT  120
AVPTVELPFD NKVEDLPKQA NLSKRFASLV RFREKRKERC FDKKIRYSVR KEVAQRMHRK  180
NGQFASLKSS SGSSSCDSAK SSLEGYGTQH SVTVPGKCHH CGVSENCTPA MRRGPDGPRT  240
LCNACGLKWA NKGTLRDLSK AGRKTSVEPN ELVCFISKNE KYGTPDNPVK AFAEGSLDHC  300
ADLEKNLFSS GSNLENDIPV GIFSSSSNLV EQETLVGFGN ASKTEVVIPA NFD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400016535

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	1e-135	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015074244.1	0.0	GATA transcription factor 19-like isoform X2
Swissprot	Q8GXL7	8e-64	GAT24_ARATH; GATA transcription factor 24
TrEMBL	M1AJN5	0.0	M1AJN5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400024207	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5602	20	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	3e-60	ZIM-like 1

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400016535

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]