PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400016291

Common Name

LOC102591806

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 514aa MW: 57350 Da PI: 6.6578

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400016291	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	8.6e-07	262	283	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H PGSC0003DMP400016291 262 FCTICGKGFKRDANLRMHMRGH 283 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.25E-5	259	286	No hit	No description
PROSITE profile	PS50157	12.03	261	288	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0026	261	283	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.6E-6	262	312	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	263	283	IPR007087	Zinc finger, C2H2
SMART	SM00355	62	310	343	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	25	348	370	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010044	Biological Process	response to aluminum ion
GO:0010447	Biological Process	response to acidic pH
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MDPDDGLSED PWIKSSSSGN ELLKIMPSDN HSFTNLNLHA QKWEGSSYLD QQNRIEQQFS 60 GFAKPKHTSE MDQQGHQRNE NHDTTRIHDW DPRALLNNLS FLEQKIHQLQ ELVHLIVGRR 120 GQDGVQGNDL IVQQQQLITA DLTSIIVQLI STAGSLLPTM KHTLSSAIPA ASQLGQAGGV 180 TVSSTAGTSA GGLTCNDSVA KVEDQSNHVD QLRDCGIEHN HAADEHELKD EDEAEEEENL 240 PPGSYEILQL EKEEILAPHT HFCTICGKGF KRDANLRMHM RGHGDEYKTP AALAKPHKEP 300 SSEPILIKRY SCPYVGCKRN KEHKKFQPLK TILCVKNHYK RTHCEKAYTC SRCNIKKFSV 360 IADLKTHEKH CGKDKWLCSC GTTFSRKDKL FGHISLFQGH TPAVSPDETK GSAGTSDRGQ 420 TSEVTMKARQ ENYKVNASHG NEFQKPGVLK ECPYNPSSYY SPLNFDTSNL NGFQEFPRPP 480 FDESDSSFSF LLSGSCEYPP HKAAKFMSSS EME*

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MDPDDGLSED PWIKSSSSGN ELLKIMPSDN HSFTNLNLHA QKWEGSSYLD QQNRIEQQFS  60
GFAKPKHTSE MDQQGHQRNE NHDTTRIHDW DPRALLNNLS FLEQKIHQLQ ELVHLIVGRR  120
GQDGVQGNDL IVQQQQLITA DLTSIIVQLI STAGSLLPTM KHTLSSAIPA ASQLGQAGGV  180
TVSSTAGTSA GGLTCNDSVA KVEDQSNHVD QLRDCGIEHN HAADEHELKD EDEAEEEENL  240
PPGSYEILQL EKEEILAPHT HFCTICGKGF KRDANLRMHM RGHGDEYKTP AALAKPHKEP  300
SSEPILIKRY SCPYVGCKRN KEHKKFQPLK TILCVKNHYK RTHCEKAYTC SRCNIKKFSV  360
IADLKTHEKH CGKDKWLCSC GTTFSRKDKL FGHISLFQGH TPAVSPDETK GSAGTSDRGQ  420
TSEVTMKARQ ENYKVNASHG NEFQKPGVLK ECPYNPSSYY SPLNFDTSNL NGFQEFPRPP  480
FDESDSSFSF LLSGSCEYPP HKAAKFMSSS EME*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00196	ampDAP	Transfer from AT1G34370	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400016291

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975523	0.0	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006351163.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Swissprot	Q9C8N5	0.0	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	M1AJ35	0.0	M1AJ35_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400023881	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-167	C2H2 family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400016291
Entrez Gene	102591806

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]