PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016026
Common NameLOC102587289
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 357aa    MW: 40314.9 Da    PI: 6.458
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016026genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66.2e-29142203159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK++ g+++pr+YYrCt +   gC ++k+v++s+edp+++e+tY+g+H+++
  PGSC0003DMP400016026 142 LDDGYSWRKYGQKDILGAKHPRGYYRCTLRhvqGCLATKQVQKSDEDPTIFEVTYRGRHTCN 203
                           59**************************988889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.928137200IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-28139203IPR003657WRKY domain
SuperFamilySSF1182901.7E-25141204IPR003657WRKY domain
SMARTSM007742.2E-40142204IPR003657WRKY domain
PfamPF031062.5E-26143202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDNYAADNNS HEFNRLVSEL TQGRDLVQQL QLHLNAPNYN SSSNSSENTR EFLIQNIQSK  60
FDRALSLLQY NTTGDNSNSL LAHSTSPAIP IIGMSDSPRS SEDSDRDLEP KDHHATRKRK  120
SSTPRWTKQV QIHPGAPIEG TLDDGYSWRK YGQKDILGAK HPRGYYRCTL RHVQGCLATK  180
QVQKSDEDPT IFEVTYRGRH TCNQGGGASV SNVNPAPPPL PVAIHQIQEP NIGNHEQYQQ  240
LIPTPHQNSN EILLNFQKNL SISKDDFNFN STHHDHPNNV PYIPSFNNYP SSSSHDHQDY  300
NFLTNSSTIP NNNFVENFPP SFNNMSAGTS QQNEADYQFN SMGFESNFPY DYQRFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-19142202868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120TRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016026
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350583.10.0PREDICTED: probable WRKY transcription factor 30
TrEMBLM1AIH30.0M1AIH3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000235020.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117431922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-43WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]