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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PGSC0003DMP400015940 |
| Common Name | LOC102592914 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
MYB_related |
| Protein Properties |
Length: 450aa MW: 50144.8 Da PI: 9.8033 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400015940 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 26 | 2.2e-08 | 130 | 172 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+WT+eE ++l d++k++ + + Ia +++ +Rt +++k+r+++
PGSC0003DMP400015940 130 SWTKEETDQLFDLCKRFDLR-FVIIADRFPSNRTVEELKDRYYS 172
7*******************.*********************96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0000812 | Cellular Component | Swr1 complex |
| GO:0035267 | Cellular Component | NuA4 histone acetyltransferase complex |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 450 aa
Download sequence Send
to blast |
MDAKDILGLP KNGPLMSQEK KSRPQKESQR KPDGISREVY ALTGGIAPLM PSIDINQLKR 60
RALSESEKIT WQWLPFTSSA RKDNLQLYHW VRVVNGVPPT GDYSFAKYNK SVDVIEYTDE 120
EYEKFLSNPS WTKEETDQLF DLCKRFDLRF VIIADRFPSN RTVEELKDRY YSVSRAITIA 180
RAPAPADVAG HPLVKEPYNA SQEVERKRAL SMVLSQTKHQ ERRDAEVLAE AKRISESRKA 240
AKAAEETELP DVSDAAPEGT EKAGIDVIST SPNAQLPSGI AAPPVSETAS TLASLRMLRV 300
YLRTYGLEQM VQAASSSAGL RTIKRVEQTL QDLGVNLKPK VPTKLVCAEH LELRKEILTL 360
LNLQKQVQYK EAEGSSYREG SYSETPGTPP KRAQRATDQD RTFIPDSTSF GGERAGKKDQ 420
KRKGPGRLSE VPSSPAQSKR PRKLKTSDG*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3hm5_A | 2e-21 | 102 | 187 | 4 | 93 | DNA methyltransferase 1-associated protein 1 |
| 4iej_A | 2e-21 | 102 | 187 | 4 | 93 | DNA methyltransferase 1-associated protein 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT013562 | 0.0 | BT013562.1 Lycopersicon esculentum clone 132299F, mRNA sequence. |
