![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400015916 | ||||||||
Common Name | LOC102597958 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 396aa MW: 44736.4 Da PI: 6.3512 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 299.7 | 7.2e-92 | 23 | 393 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklf 84 lv+lLl++Ae v++++++la++l++r as +g+p+qRl +yf++AL++r+ rs+ + + + ++ + s + a+ + PGSC0003DMP400015916 23 LVHLLLAAAEEVNNQQFHLASKLISRCMWVASDSGNPVQRLSFYFAKALEERIDRSTGRYTCTDEDRHL---KyiktmSLGTNYAFLTC 108 68*****************************************************33333222222222...11222223333333448 PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeel 172 +++ P+ ++ +++ q+I+e v +++++H iDf+i G+QW+ L+qaLa++ ++ l+iT+vgs ++ke+ e t + L++fA++l PGSC0003DMP400015916 109 HKLIPFSQVMQFAGVQTIVENVRSAKKIHLIDFNIRSGIQWIVLIQALAEKGdSPIELLKITAVGS---TEKENFEVTSNTLHSFAKSL 194 99************************************************98344559********...5799**************** PP GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 g++f+f+++ +++++d++ e+ ++k++E++aV + l ++l ++ +l++ ++k+v+s+ P+++vv e ea+hns+sFl+rf+e+l PGSC0003DMP400015916 195 GLSFSFDIVFVSDMKDFKKESVNIKTDETVAVYCNSVLRTMLLRPDCLDN----LMKVVRSIGPTIIVVGEVEANHNSPSFLNRFIETL 279 *****************************************977777766....*********************************** PP GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349 ++ysa+fd++e + r s r+++E +++g+ i+n+va+eg++r+ r+ +le Wr+ + ++G+ + +lse+a qa+l+l++++ + PGSC0003DMP400015916 280 YFYSAFFDCFEDCMDRGSPCRTTIEGVYFGEGIRNIVAAEGEDRFTRNVKLEVWRAFFARFGMVEEELSESAWYQAHLILKQFGqGSSC 368 ************************************************************************************77779 PP GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374 ++++ + l++gWk+ p+ s+S W+ PGSC0003DMP400015916 369 DLQKDGKGLIIGWKGTPIHSLSIWK 393 999*********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.058 | 1 | 372 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-89 | 23 | 393 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 396 aa Download sequence Send to blast |
MFIHPYGSAL SGLCMEETRD VELVHLLLAA AEEVNNQQFH LASKLISRCM WVASDSGNPV 60 QRLSFYFAKA LEERIDRSTG RYTCTDEDRH LKYIKTMSLG TNYAFLTCHK LIPFSQVMQF 120 AGVQTIVENV RSAKKIHLID FNIRSGIQWI VLIQALAEKG DSPIELLKIT AVGSTEKENF 180 EVTSNTLHSF AKSLGLSFSF DIVFVSDMKD FKKESVNIKT DETVAVYCNS VLRTMLLRPD 240 CLDNLMKVVR SIGPTIIVVG EVEANHNSPS FLNRFIETLY FYSAFFDCFE DCMDRGSPCR 300 TTIEGVYFGE GIRNIVAAEG EDRFTRNVKL EVWRAFFARF GMVEEELSES AWYQAHLILK 360 QFGQGSSCDL QKDGKGLIIG WKGTPIHSLS IWKLL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-45 | 41 | 393 | 21 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400015916 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC238918 | 0.0 | AC238918.11 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210f9 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006349181.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | M1AI73 | 0.0 | M1AI73_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1AI74 | 0.0 | M1AI74_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400023345 | 0.0 | (Solanum tuberosum) | ||||
STRING | PGSC0003DMT400023346 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03450.1 | 8e-54 | RGA-like 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400015916 |
Entrez Gene | 102597958 |
Publications ? help Back to Top | |||
---|---|---|---|
|