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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400015915 |
Common Name | LOC102597958 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
GRAS |
Protein Properties |
Length: 585aa MW: 66026.8 Da PI: 4.8552 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400015915 | genome | PGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 297.8 | 2.7e-91 | 212 | 582 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklf 84
lv+lLl++Ae v++++++la++l++r as +g+p+qRl +yf++AL++r+ rs+ + + + ++ + s + a+ +
PGSC0003DMP400015915 212 LVHLLLAAAEEVNNQQFHLASKLISRCMWVASDSGNPVQRLSFYFAKALEERIDRSTGRYTCTDEDRHL---KyiktmSLGTNYAFLTC 297
68*****************************************************33333222222222...11222223333333448 PP
GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeel 172
+++ P+ ++ +++ q+I+e v +++++H iDf+i G+QW+ L+qaLa++ ++ l+iT+vgs ++ke+ e t + L++fA++l
PGSC0003DMP400015915 298 HKLIPFSQVMQFAGVQTIVENVRSAKKIHLIDFNIRSGIQWIVLIQALAEKGdSPIELLKITAVGS---TEKENFEVTSNTLHSFAKSL 383
99************************************************98344559********...5799**************** PP
GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
g++f+f+++ +++++d++ e+ ++k++E++aV + l ++l ++ +l++ ++k+v+s+ P+++vv e ea+hns+sFl+rf+e+l
PGSC0003DMP400015915 384 GLSFSFDIVFVSDMKDFKKESVNIKTDETVAVYCNSVLRTMLLRPDCLDN----LMKVVRSIGPTIIVVGEVEANHNSPSFLNRFIETL 468
*****************************************977777766....*********************************** PP
GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
++ysa+fd++e + r s r+++E +++g+ i+n+va+eg++r+ r+ +le Wr+ + ++G+ + +lse+a qa+l+l++++ +
PGSC0003DMP400015915 469 YFYSAFFDCFEDCMDRGSPCRTTIEGVYFGEGIRNIVAAEGEDRFTRNVKLEVWRAFFARFGMVEEELSESAWYQAHLILKQFGqGSSC 557
************************************************************************************77779 PP
GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
++++ + l++gWk+ p+ s+S W+
PGSC0003DMP400015915 558 DLQKDGKGLIIGWKGTPIHSLSIWK 582
999*********************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 585 aa
Download sequence Send
to blast |
MTNVSISNDI FSDFQDDQFH LKGYERSELV VNGIEEDCVD IDSLYSICGL NNEENTSDEQ 60 VRTNLLEDQQ QSLSDWTQNH FPTNTVMPLQ PVQIQSTIEA PKNDDFRPQV PEPGNSSNEK 120 PKPFSLASLE LLSNYGRLSK KSSEENLSTN ALSCEARLGN SQKLPMEEIL RAAGERYIQY 180 STQRLDGLSM FIHPYGSALS GLCMEETRDV ELVHLLLAAA EEVNNQQFHL ASKLISRCMW 240 VASDSGNPVQ RLSFYFAKAL EERIDRSTGR YTCTDEDRHL KYIKTMSLGT NYAFLTCHKL 300 IPFSQVMQFA GVQTIVENVR SAKKIHLIDF NIRSGIQWIV LIQALAEKGD SPIELLKITA 360 VGSTEKENFE VTSNTLHSFA KSLGLSFSFD IVFVSDMKDF KKESVNIKTD ETVAVYCNSV 420 LRTMLLRPDC LDNLMKVVRS IGPTIIVVGE VEANHNSPSF LNRFIETLYF YSAFFDCFED 480 CMDRGSPCRT TIEGVYFGEG IRNIVAAEGE DRFTRNVKLE VWRAFFARFG MVEEELSESA 540 WYQAHLILKQ FGQGSSCDLQ KDGKGLIIGW KGTPIHSLSI WKLL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC238918 | 0.0 | AC238918.11 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210f9 map 1, complete sequence. |
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |