PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400015853 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 171aa MW: 18926.6 Da PI: 3.9165 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 49.7 | 7.5e-16 | 7 | 45 | 22 | 59 |
EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 r+YYrC+s+ gC++kk+ver+++d ++++itY+++Hnh+ PGSC0003DMP400015853 7 RGYYRCSSSkGCSAKKQVERCSKDASLFVITYTSSHNHP 45 99*****998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 3.4E-9 | 2 | 46 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-13 | 6 | 47 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.073 | 7 | 47 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-12 | 7 | 45 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-15 | 7 | 47 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MYDFGYRGYY RCSSSKGCSA KKQVERCSKD ASLFVITYTS SHNHPGPNLP KDSVTQEQIV 60 DQHVSLEDNN DDDDDNDDTQ SCKSPLNSTT TGTSIPQGIL EENLFSDSFL GTISYDDFLP 120 LSYPQLMKFP KSELSEENDF YDELGELELP PSSTSFAGIF EEAILVDPSS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400015853 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006349180.1 | 1e-116 | PREDICTED: probable WRKY transcription factor 65 isoform X1 | ||||
Refseq | XP_015164982.1 | 1e-117 | PREDICTED: probable WRKY transcription factor 65 isoform X2 | ||||
TrEMBL | M1AI30 | 1e-120 | M1AI30_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400023272 | 1e-116 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 7e-17 | WRKY DNA-binding protein 35 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400015853 |
Publications ? help Back to Top | |||
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