PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400015852
Common NameLOC102597639
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 209aa    MW: 23152.5 Da    PI: 4.3045
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400015852genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.66.8e-302583259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC++kk+ver+++d ++++itY+++Hnh+
  PGSC0003DMP400015852 25 SDCWSWRKYGQKPIKGSPYPRGYYRCSSSkGCSAKKQVERCSKDASLFVITYTSSHNHP 83
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-311685IPR003657WRKY domain
SuperFamilySSF1182909.29E-262185IPR003657WRKY domain
SMARTSM007741.9E-342484IPR003657WRKY domain
PROSITE profilePS5081130.3312585IPR003657WRKY domain
PfamPF031068.5E-252683IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAQKVVITVQ MEAKSLKQKN EGPPSDCWSW RKYGQKPIKG SPYPRGYYRC SSSKGCSAKK  60
QVERCSKDAS LFVITYTSSH NHPGPNLPKD SVTQEQIVDQ HVSLEDNNDD DDDNDDTQSC  120
KSPLNSTTTG TSIPQGILEE NLFSDSFLGT ISYDDFLPLS YPQLMKFPKS ELSEENDFYD  180
ELGELELPPS STSFAGIFEE AILVDPSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-2026861880Disease resistance protein RRS1
5w3x_D4e-2026861880Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400015852
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349180.11e-154PREDICTED: probable WRKY transcription factor 65 isoform X1
TrEMBLM1AI261e-152M1AI26_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000232721e-153(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-34WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]