PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400015688
Common NameLOC102579164
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 404aa    MW: 42971.1 Da    PI: 9.5137
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400015688genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.81e-3780139362
                zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                           e+alkcprCds+ntkfCy+nnyslsqPr+fCkaC+ryWt+GGalr vPvGgg+r+nk+s+
  PGSC0003DMP400015688  80 ETALKCPRCDSANTKFCYFNNYSLSQPRHFCKACKRYWTRGGALRSVPVGGGCRRNKRSN 139
                           6789*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3563132IPR003851Zinc finger, Dof-type
PfamPF027012.4E-3282137IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.13483137IPR003851Zinc finger, Dof-type
PROSITE patternPS01361085121IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MNFSSIPAYL DPANWQQQSG STIQNHHHQQ QQLTSAPPPP VLPPSPVVVP LQPHGGGGAG  60
SIRPGSMADR ARMANIPMPE TALKCPRCDS ANTKFCYFNN YSLSQPRHFC KACKRYWTRG  120
GALRSVPVGG GCRRNKRSNN NNKNSNNNNN NNSSKSPASS TSTDGRQGTN NSGSSTTISS  180
HSNSFSGPAS ATSLLGLMSP QIPPLRFMSP LGQFSSDHHH HHHFTPSNHM NLNFSTSSCG  240
NILGGTTEGM MVNNNNMLGA GAGAGVGVGG HVASLLSSGN LEHWKMQQQF PNFLGGFDPS  300
NSPSSYPFQG GVHEAVQYLG GESTSQISRP KISTSMLNQM ASVKMEDNNN NSNNNNNNNN  360
QDQSSLSRQL LGIQGNNENW NTSANAWSDL SASFSSSSPS NAL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00483DAPTransfer from AT5G02460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400015688
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341037.10.0PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBLM1AHM90.0M1AHM9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000230330.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19172463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.15e-44Dof family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]