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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400015662 | ||||||||
Common Name | LOC102600423 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 762aa MW: 85910.5 Da PI: 5.8496 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 374.5 | 1.3e-114 | 387 | 759 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l++l+++cA+av+++d + a +lL+++++++sp gd +qRla++f+ +L+arla+++s++ykal ++ts ++ l+a++l+ sP PGSC0003DMP400015662 387 LRTLMINCAQAVAADDSRIAYELLKQIRQHSSPFGDGNQRLAHCFADGLEARLAGTGSQIYKALVNKRTS---AADLLKAYHLYLASSP 472 57899***********************************************************999998...9*************** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176 + k+s ++ N++I+ +e+++rvH+iDf+i +G+QWp+++q +a+R++gpp+lRiTg++ p++g +e++eetg+rLa++A++++vpf PGSC0003DMP400015662 473 FRKISSFASNKTIMIKAENATRVHVIDFGILYGFQWPTFIQRIAEREGGPPRLRITGIEFPQPGfrPAERIEETGRRLADYARSFNVPF 561 ***************************************************************9************************* PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 e+++ +ak++e++++e+L+++++E laVn+ ++ ++l+de+ ++es r+ vL+lv++++P+++v+ + ++++ F++rf eal ++s PGSC0003DMP400015662 562 EYHA-IAKKWESITVEDLKLDKDEFLAVNCLYRFKNLHDETIAVESSRTIVLNLVRKINPDIFVHGIVNGAYSAPFFVTRFREALFHFS 649 ****.7*********************************************************************************** PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek.aakqaklllrkvksdgyrvee 353 alfd+le+ +pre er+ +Ere++gre+ nv+aceg er+er et+++W++r++ a F+++p++ + +++a +r + + + ++e PGSC0003DMP400015662 650 ALFDMLETIVPREIPERRLIEREIFGREALNVIACEGWERVERPETYKQWQARIMGARFTQIPFDREeFVNKAIEKVRLGYHRDFVIDE 738 ****************************************************************86515677777888888788***** PP GRAS 354 esgslvlgWkdrpLvsvSaWr 374 +s++l+lgWk+r+++++S+W+ PGSC0003DMP400015662 739 DSQWLLLGWKGRTIYALSCWK 759 ********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.033 | 361 | 738 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.6E-112 | 387 | 759 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 762 aa Download sequence Send to blast |
MDPRFNGHPS SLNNFRFGNQ PLPFSSEQRM INGPRFGLIY SDQNLLNGPR LENNFVQHDF 60 GAVGFISGDH LPTNVESRTD LGVENDFNED IDFSDAVLSY INRMLMEEDM EDKTDMLQES 120 LELQAKEKSL YEALGKKYPL SPEQNVFTDR NSESPDDYFA GSIYNSTSNT GGSSGYLIDP 180 RGVNISTDCN SSYFEGLSFH NTSSVCSSNS GSNVVDGFLD SPVSSFHIPD IYDESQSILN 240 FQKGVEEASK FLPTSNKLLN SVDINDLPSR EPQRQAGYAA AQVEEKDEGE TSPTEVRGKK 300 NPLRGDNNIE GERSSKQAAV FTESTLRSEE FDIVLLNSMG KGGEALEAYR QNLRNAKSKT 360 TVQISKGSKG GKGRGKKQGG KKEVIDLRTL MINCAQAVAA DDSRIAYELL KQIRQHSSPF 420 GDGNQRLAHC FADGLEARLA GTGSQIYKAL VNKRTSAADL LKAYHLYLAS SPFRKISSFA 480 SNKTIMIKAE NATRVHVIDF GILYGFQWPT FIQRIAEREG GPPRLRITGI EFPQPGFRPA 540 ERIEETGRRL ADYARSFNVP FEYHAIAKKW ESITVEDLKL DKDEFLAVNC LYRFKNLHDE 600 TIAVESSRTI VLNLVRKINP DIFVHGIVNG AYSAPFFVTR FREALFHFSA LFDMLETIVP 660 REIPERRLIE REIFGREALN VIACEGWERV ERPETYKQWQ ARIMGARFTQ IPFDREEFVN 720 KAIEKVRLGY HRDFVIDEDS QWLLLGWKGR TIYALSCWKP V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-48 | 370 | 760 | 1 | 379 | Protein SCARECROW |
5b3h_D | 2e-48 | 370 | 760 | 1 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400015662 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006341017.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | M1AHK3 | 0.0 | M1AHK3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400022997 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400015662 |
Entrez Gene | 102600423 |
Publications ? help Back to Top | |||
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