PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400015491
Common NameLOC102578163
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 275aa    MW: 31417.1 Da    PI: 8.488
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400015491genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000145274123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C+ C + F++   L  H+++H
  PGSC0003DMP400015491 52 YTCSFCRREFRSAQALGGHMNVH 74
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-64979No hitNo description
SMARTSM003550.00615274IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-55275IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2195279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEQSRYWMST KRKHDMTLSK NPSSYGDSWE EQAFAEDASG ALGGCIWPPR SYTCSFCRRE  60
FRSAQALGGH MNVHRRDRAR MKQSPPSNSP SGHDHPVFAP PPPLPPNHHH NRHVQYPSQI  120
CTFMYNPNSD SASGVPIRVS SQKTLATHHH SYFSSIVQEE KKNNLSSSWS NLVADKYSCL  180
SSVKNDEEKK LKSIDFKKDQ ERNLEVMIDS SFRTKHDHIV ETNCKRRKVD QEDNISFANL  240
FPRTSSSIER CRPQSEALER IPSAIEELDL ELKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-134774229superman protein
2l1o_A2e-134774229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400015491
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341202.10.0PREDICTED: uncharacterized protein LOC102578163
TrEMBLM1AH550.0M1AH55_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000227390.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.15e-27zinc-finger protein 10
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]