PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400014738 | ||||||||
Common Name | LOC102595265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 118aa MW: 12353.5 Da PI: 9.2485 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 92 | 113 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ C+++F + L++H + H PGSC0003DMP400014738 92 CKTCNRTFGSENALESHSKAkH 113 *****************98777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.34E-5 | 80 | 112 | No hit | No description |
PROSITE profile | PS50157 | 10.596 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 92 | 113 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.0E-6 | 92 | 114 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009294 | Biological Process | DNA mediated transformation | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010162 | Biological Process | seed dormancy process | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MGEDEEGDSD EDQSDESEEG TPKKAEPSRK RPADSAAKTP VPDKKTKFLT PQKTDGKKGA 60 VHVATPHPSK QAGKTPGNKP NQTPKSGGSL ACKTCNRTFG SENALESHSK AKHSVGK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400014738 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014029 | 1e-175 | BT014029.1 Lycopersicon esculentum clone 133091F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338944.1 | 4e-78 | PREDICTED: histone deacetylase HDT1-like | ||||
Swissprot | Q6V9I6 | 8e-36 | HDT1_SOLCH; Histone deacetylase HDT1 | ||||
TrEMBL | M1AFG9 | 2e-77 | M1AFG9_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1AFH0 | 1e-76 | M1AFH0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400021644 | 2e-77 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 2e-27 | histone deacetylase 2C |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400014738 |
Entrez Gene | 102595265 |
Publications ? help Back to Top | |||
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