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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400014725 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 219aa MW: 25430.8 Da PI: 8.8798 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 76.6 | 2.9e-24 | 105 | 165 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK++ + ++pr+Y+rCt++ gC++ k+v+r +e+p ++ itY g+H+++ PGSC0003DMP400014725 105 YDGHAWRKYGQKKILNDKYPRNYFRCTHKfdqGCQANKQVQRIQENPPLFRITYYGHHTCK 165 59**************************9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.7E-26 | 91 | 165 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.887 | 99 | 162 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-24 | 100 | 166 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-35 | 104 | 166 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.0E-24 | 106 | 165 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MKSSLLKNKT SDLEKIIVEL NRGREFTCRL REILKKHVDH VDDEDAYMLV GKIMSSFCAT 60 LSILSSNEDS SSSSCKISSL KDQRGRYKRR RTLETSIKET STLVYDGHAW RKYGQKKILN 120 DKYPRNYFRC THKFDQGCQA NKQVQRIQEN PPLFRITYYG HHTCKTCPKV SQMICDSPND 180 HEDSNSVLLN FNSTNNNYNN HHHFLGMMVE TVDLSFEF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-23 | 106 | 165 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400014725 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-115 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016543153.1 | 1e-110 | PREDICTED: probable WRKY transcription factor 70 | ||||
Swissprot | K4BIZ9 | 2e-37 | WRK70_SOLLC; WRKY DNA-binding transcription factor 70 | ||||
TrEMBL | M1AFF6 | 1e-163 | M1AFF6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400021625 | 1e-163 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4230 | 21 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 2e-30 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400014725 |
Publications ? help Back to Top | |||
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