PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 263aa MW: 29886.3 Da PI: 6.937

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400014704	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.2e-11	77	124	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riNs ++ Lr+ll + Kl+Ka+ L k+v+ +++L PGSC0003DMP400014704 77 AKNHKEAERRRRERINSHLHSLRTLLSCN-----SKLDKASLLAKVVQRVREL 124 579*********************997.....7**********999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-13	66	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.478	75	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-12	75	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-9	78	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-10	81	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0005634	Cellular Component	nucleus
GO:0009941	Cellular Component	chloroplast envelope
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MQQQQDFQEN LESCNYFSKN KSSSSDNNMM GDYYGFDIEA IKSFCSSSPF YPHDHHVEFQ 60 ETIESNNNNN NSPEARAKNH KEAERRRRER INSHLHSLRT LLSCNSKLDK ASLLAKVVQR 120 VRELKEQTSQ IMQSETNLLF PSETDEISVL SSNDCLADGR LLIKASLCCE DRSDLIPDLI 180 ETLKSLGLSP IRAEMVTLGG RIRNVIVLAV DHKESNNNNT DHDESSLLFL RDALRSIVQR 240 SSYGTSERGK RRRVLGQGTR NY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	87	RAKNHKEAERRRR
2	83	88	ERRRRE
3	249	253	KRRRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400014704

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975522	0.0	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006362291.2	0.0	PREDICTED: transcription factor bHLH106
Swissprot	O80674	2e-54	BH106_ARATH; Transcription factor bHLH106
TrEMBL	M1AFE2	0.0	M1AFE2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400021599	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12841	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	7e-57	bHLH family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400014704
Entrez Gene	102598787

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]