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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400014551 | ||||||||
Common Name | LOC102592780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 27458.6 Da PI: 5.4505 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.1 | 1.2e-06 | 184 | 228 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + n Er+RR ++++ L+ ++P a ++++ +++L +Av+Y+ksL PGSC0003DMP400014551 184 TSNCSERKRR-KLKKMVKALKGIVPGA-----RRMNTVTVLDEAVRYLKSL 228 679999*998.7**************9.....89***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.033 | 179 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-9 | 182 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.2E-9 | 183 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-4 | 184 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-7 | 186 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.80E-8 | 189 | 233 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MPNNYQFSPQ KPFVSLEDNA AGGNIFDIPA PSVFGTMALP TGFKSSVPFH GFEIQSSEAC 60 PKNFIIFDQT DYRSQIMYHP AMASKFPYPD LNYNSTCFQD GMERKIANNE NTEVSSYLKE 120 DSDDINALLS LEEEEHEEYD EEEVSTARTD ANYGCSSPES YSNYDCQSKK SRTSSFRKSS 180 GSSTSNCSER KRRKLKKMVK ALKGIVPGAR RMNTVTVLDE AVRYLKSLKV EVQKLGVDNL 240 KTYA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400014551 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006365569.1 | 0.0 | PREDICTED: transcription factor bHLH144-like | ||||
TrEMBL | M1AF13 | 0.0 | M1AF13_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400021383 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8124 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 6e-32 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400014551 |
Entrez Gene | 102592780 |
Publications ? help Back to Top | |||
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