PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014268
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 502aa    MW: 55781.3 Da    PI: 9.7055
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014268genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-057496123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C++C+k F r  nL+ H r H
  PGSC0003DMP400014268 74 FVCEICNKGFQRDQNLQLHRRGH 96
                          89*******************88 PP
2zf-C2H211.90.00071151173123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC++C+k +  +s+ k H + +
  PGSC0003DMP400014268 151 WKCEKCSKKYAVQSDWKAHSKIC 173
                           58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.25E-77396No hitNo description
Gene3DG3DSA:3.30.160.601.6E-57396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9497496IPR007087Zinc finger, C2H2
PfamPF121718.0E-57496IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0177496IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM0035588116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-5138172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.25E-7146171No hitNo description
SMARTSM00355140151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MSNDGLSCSM RGGFTFIQDP KNPSTNINHP NPNPNSNPNV SCANKRKRNL PGNPDPDAEV  60
IALSPTSLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRNNKEV IKKKVYICPE  120
KSCVHHDPSR ALGDLTGVKK HYSRKHGEKK WKCEKCSKKY AVQSDWKAHS KICGTKEYKC  180
DCGTLFSRKD SFITHRAFCD ALAEESTRFT SIPTATNLNN LRNQLINGGI STNLQQQQQQ  240
MSGNISQLMG LGSLDPSNQL NLDHGQKTRL PLWLHHNNAN YGNPNDFLST PSTTTSTLAH  300
ELVQMAPHTS MLGLSSSQNN NNNNNNNNNQ WFVNDDGGGA ITTTSSSMPR VLKEEEENKT  360
LSPMYYNNNH MSATALLQKA AQIGSTIHHN NSPLFSNQFG LMTSSSLNMM NNSSSSSATN  420
VAIHENIQGN NGLLIGATNS TSFVANNANT LMMIQDKGKQ GYLTRDFLGV GRNEKRPFLQ  480
QTHEMAKFDN NNNNNNNSRI F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-35147212368Zinc finger protein JACKDAW
5b3h_F5e-35147212368Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014268
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2316700.0AC231670.1 Solanum tuberosum chromosome 11 clone RH121D01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340149.10.0PREDICTED: protein indeterminate-domain 9
TrEMBLM1AEC30.0M1AEC3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000209450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-106C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]