PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014169
Common NameLOC102588628
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92204.3 Da    PI: 6.055
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014169genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-182583357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PGSC0003DMP400014169 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIREChilsNIEPKQIKVWFQNRRCREKQ 83
                          56789****************************************************97 PP
2START1525.2e-481643712204
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           +aee+++e+++ka+ ++  Wv ++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W ++++ +e++     g  
  PGSC0003DMP400014169 164 IAEETLAEFLSKATGTAVDWVPMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRNVEVITIFPAGng 251
                           68999*****************************************************.7777777777**************999999 PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                           g+++l +++ +a+++l+p Rd +++Ry+ +l  g++v++++S++ + + p+    s++vRa++lpSg+li+p+++g+s +++v+h +l+
  PGSC0003DMP400014169 252 GTVELLYTQIYAPTTLAPaRDLWTLRYTTTLDNGSLVVCERSLSGNGPGPNpaaASQFVRAQMLPSGYLIRPCDGGGSIIHIVDHLNLE 340
                           *********************************************9999999999********************************** PP

                           SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                 START 174 grlphwllrslvksglaegaktwvatlqrqc 204
                           +++ +++lr+l++s+ + ++k++ a+l++ +
  PGSC0003DMP400014169 341 AWSAPEILRPLYESSKVVAQKMTIAALRYAR 371
                           ***************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4182084IPR001356Homeobox domain
SuperFamilySSF466899.41E-172186IPR009057Homeodomain-like
SMARTSM003896.7E-172288IPR001356Homeobox domain
CDDcd000864.78E-162585No hitNo description
PfamPF000467.2E-162683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-182783IPR009057Homeodomain-like
CDDcd146864.87E-677116No hitNo description
PROSITE profilePS5084825.78154382IPR002913START domain
CDDcd088755.37E-68158374No hitNo description
SMARTSM002344.8E-40163373IPR002913START domain
Gene3DG3DSA:3.30.530.205.6E-19164368IPR023393START-like domain
SuperFamilySSF559618.1E-33164375No hitNo description
PfamPF018523.7E-45164371IPR002913START domain
PfamPF086701.0E-48696840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MAMVAQQHRE SSSGSITKHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECH  60
ILSNIEPKQI KVWFQNRRCR EKQRKESSRL QTVNRKLSAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLQ SVSAATTDVS CESVVTTPQH SLRDANNPAG LLPIAEETLA EFLSKATGTA  180
VDWVPMPGMK PGPDSVGIFA ISHSCSGVAA RACGLVSLEP TKIAEILKDR PSWFRDCRNV  240
EVITIFPAGN GGTVELLYTQ IYAPTTLAPA RDLWTLRYTT TLDNGSLVVC ERSLSGNGPG  300
PNPAAASQFV RAQMLPSGYL IRPCDGGGSI IHIVDHLNLE AWSAPEILRP LYESSKVVAQ  360
KMTIAALRYA RQLAQETSGE VVYGLGRQPA VLRTFSQRLC RGFNDAINGF GDDGWSMLSS  420
DGAEDVIVAV NSRKNLATTS VPLSSLGGIL CAKASMLLQN VPPAVLVRFL REHRSEWADF  480
NVDAFVASAL KSCPYTYPGM RPTRFTGSQI IMPLGHTIEH EEMLEVIRLE GHSIGQEDAF  540
MPRDIHLLQM CSGTDENAVG ACSELVFAPI DEMFPDDAPL LPSGFRIIPL ESKSGDAQDT  600
LNAHRTLDLA SSLEVGPARN SATGDMASCY SARSVLTIAF QFPFEDNLQD NVATMARQYV  660
RSVVSSVQRV AMAISPTGMN PTLGAKLSPG SPEAVTLSHW ICQSYSYHMG TELLRADSSG  720
DESVLKNLWQ HQDAILCCSL KSLPVFIFAN KAGLDMLETT LVALQDISLD KIFDEPGREV  780
LLSEFAKIME QGFACLPGGI CMSTMGRHIS YEQAIAWKVF ASSEENAVHC LAFSFINWSF  840
V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014169
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135770.0BT013577.1 Lycopersicon esculentum clone 132322R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340193.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLM1AE390.0M1AE39_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000208010.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  7. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]